Variant report

Variant	rs6475021
Chromosome Location	chr9:16278893-16278894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6475022	0.92[EUR][1000 genomes]
rs7018975	0.81[EUR][1000 genomes]
rs7042839	0.88[ASN][1000 genomes]
rs7043435	0.80[EUR][1000 genomes]
rs7851095	0.96[ASN][1000 genomes]
rs869623	0.81[EUR][1000 genomes]
rs914657	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892642	chr9:16233085-16282979	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv892643	chr9:16275107-16306523	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv892644	chr9:16275107-16389006	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16273600-16281600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:16274200-16280600	Weak transcription	Ovary	ovary
3	chr9:16275800-16279200	Enhancers	Stomach Smooth Muscle	stomach
4	chr9:16276600-16282000	Weak transcription	HSMMtube	muscle
5	chr9:16276800-16282000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:16277400-16281600	Weak transcription	Liver	Liver
7	chr9:16277600-16279400	Enhancers	Fetal Stomach	stomach
8	chr9:16277800-16279200	Enhancers	Fetal Muscle Trunk	muscle
9	chr9:16278000-16279000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:16278000-16279200	Enhancers	Fetal Muscle Leg	muscle
11	chr9:16278200-16279200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:16278400-16279000	Enhancers	A549	lung
13	chr9:16278400-16279200	Enhancers	Fetal Lung	lung
14	chr9:16278400-16279200	Enhancers	NHDF-Ad	bronchial
15	chr9:16278400-16279600	Enhancers	Colon Smooth Muscle	Colon
16	chr9:16278400-16280400	Enhancers	Fetal Intestine Large	intestine
17	chr9:16278400-16280600	Enhancers	Fetal Intestine Small	intestine
18	chr9:16278600-16279000	Enhancers	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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