Variant report

Variant	rs6475586
Chromosome Location	chr9:21836293-21836294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:49347364..49349093-chr9:21834924..21836871,2	MCF-7	breast:
2	chr9:21827757..21830493-chr9:21833555..21836512,2	MCF-7	breast:
3	chr9:21830900..21838533-chr9:22079723..22086252,27	MCF-7	breast:
4	chr9:21834613..21838113-chr9:22103301..22107241,3	MCF-7	breast:
5	chr9:21832214..21835164-chr9:21835316..21836950,2	MCF-7	breast:
6	chr9:21834703..21838145-chr9:22099294..22103119,4	MCF-7	breast:
7	chr9:21831674..21838507-chr9:22079741..22086703,33	MCF-7	breast:
8	chr9:21835433..21837230-chr9:22087547..22089393,2	MCF-7	breast:
9	chr9:21830834..21834057-chr9:21834525..21838075,6	MCF-7	breast:
10	chr9:21834165..21837043-chr9:22102192..22103833,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124171	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12003470	1.00[AMR][1000 genomes]
rs3731235	1.00[AMR][1000 genomes]
rs59438591	1.00[AMR][1000 genomes]
rs72547291	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21804000-21838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:21806600-21841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:21809200-21836800	Weak transcription	Small Intestine	intestine
4	chr9:21814400-21837400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr9:21814400-21845200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:21816400-21836600	Weak transcription	Psoas Muscle	Psoas
7	chr9:21817400-21837800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:21817800-21840600	Weak transcription	Colonic Mucosa	Colon
9	chr9:21818600-21840800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:21818800-21840400	Weak transcription	Right Ventricle	heart
11	chr9:21819400-21840400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr9:21819400-21841600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:21823800-21840400	Strong transcription	Fetal Muscle Leg	muscle
14	chr9:21824200-21840400	Strong transcription	Fetal Lung	lung
15	chr9:21825000-21840000	Strong transcription	Fetal Intestine Large	intestine
16	chr9:21825000-21840600	Strong transcription	Dnd41	blood
17	chr9:21825000-21841800	Strong transcription	Primary T cells from cord blood	blood
18	chr9:21825000-21841800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr9:21825200-21836600	Strong transcription	Fetal Stomach	stomach
20	chr9:21825200-21840200	Weak transcription	Pancreas	Pancrea
21	chr9:21825200-21840800	Strong transcription	Fetal Muscle Trunk	muscle
22	chr9:21825200-21841400	Strong transcription	Fetal Thymus	thymus
23	chr9:21825200-21842200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:21825400-21840400	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr9:21825400-21840600	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr9:21825800-21838600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr9:21825800-21840200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr9:21825800-21840600	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:21825800-21840600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:21826000-21838400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:21826000-21840800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:21828200-21838200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr9:21828200-21838800	Strong transcription	Fetal Intestine Small	intestine
34	chr9:21828400-21837800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:21828800-21836800	Genic enhancers	NHEK	skin
36	chr9:21829400-21840000	Weak transcription	Spleen	Spleen
37	chr9:21831000-21840600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:21831200-21838000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:21831800-21842000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr9:21832000-21840200	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr9:21832200-21836600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr9:21832200-21840400	Strong transcription	Ovary	ovary
43	chr9:21832200-21842000	Strong transcription	Duodenum Mucosa	Duodenum
44	chr9:21832200-21852400	Weak transcription	Stomach Mucosa	stomach
45	chr9:21832400-21837000	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr9:21832400-21837200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:21832400-21838600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr9:21832400-21840600	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr9:21832400-21841800	Strong transcription	Stomach Smooth Muscle	stomach
50	chr9:21832600-21836400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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