Variant report

Variant	rs6477605
Chromosome Location	chr9:110691783-110691784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11790225	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1591901	0.90[EUR][1000 genomes]
rs59328651	0.95[EUR][1000 genomes]
rs61482650	0.85[EUR][1000 genomes]
rs7020351	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.95[EUR][1000 genomes]
rs7020720	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021005	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021078	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[EUR][1000 genomes]
rs7035100	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[EUR][1000 genomes]
rs7038688	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051101	chr9:110548257-110697253	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv893701	chr9:110650482-110709587	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110685400-110691800	Weak transcription	Fetal Stomach	stomach
2	chr9:110687000-110694800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:110689000-110692800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr9:110689400-110691800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:110690200-110692000	Weak transcription	NHDF-Ad	bronchial
6	chr9:110690600-110696000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr9:110691000-110692400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr9:110691200-110692600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr9:110691400-110692000	Enhancers	Brain Germinal Matrix	brain
10	chr9:110691400-110692400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:110691400-110692600	Enhancers	Small Intestine	intestine
12	chr9:110691600-110692200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:110691600-110692400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:110691600-110692400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:110691600-110692600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr9:110691600-110692600	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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