Variant report

Variant	rs6479307
Chromosome Location	chr9:108073914-108073915
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108052363..108054677-chr9:108071523..108074219,3	MCF-7	breast:
2	chr9:108071266..108075480-chr9:108075885..108078483,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12378850	1.00[GIH][hapmap]
rs6479306	1.00[CEU][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7018875	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7035065	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs7858178	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv831678	chr9:107923522-108112813	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893685	chr9:107940737-108083485	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv893686	chr9:107968330-108083485	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893687	chr9:107973277-108083485	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv893688	chr9:107974761-108083485	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv893689	chr9:107978563-108130606	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv893690	chr9:107992706-108083485	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108049400-108074200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:108054600-108090800	Weak transcription	Psoas Muscle	Psoas
3	chr9:108055600-108151200	Weak transcription	Esophagus	oesophagus
4	chr9:108056800-108077800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr9:108057400-108082600	Weak transcription	Dnd41	blood
6	chr9:108059400-108081200	Weak transcription	Fetal Kidney	kidney
7	chr9:108060000-108075000	Weak transcription	Ovary	ovary
8	chr9:108060200-108077000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:108062200-108076400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:108062200-108077400	Weak transcription	Thymus	Thymus
11	chr9:108062200-108084000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:108062200-108091400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:108062200-108091800	Weak transcription	Aorta	Aorta
14	chr9:108062200-108098800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr9:108062400-108098800	Weak transcription	Spleen	Spleen
16	chr9:108062400-108104600	Weak transcription	Right Ventricle	heart
17	chr9:108062600-108080600	Weak transcription	HepG2	liver
18	chr9:108062600-108081400	Weak transcription	Colonic Mucosa	Colon
19	chr9:108062600-108083000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr9:108062600-108083400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:108062600-108090800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:108062600-108090800	Weak transcription	Fetal Thymus	thymus
23	chr9:108062600-108091000	Weak transcription	Adipose Nuclei	Adipose
24	chr9:108062600-108091600	Weak transcription	NHDF-Ad	bronchial
25	chr9:108062600-108098600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr9:108062600-108098800	Weak transcription	Left Ventricle	heart
27	chr9:108062600-108098800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:108062800-108080800	Weak transcription	A549	lung
29	chr9:108062800-108098400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr9:108062800-108098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:108063000-108074200	Enhancers	Brain Substantia Nigra	brain
32	chr9:108063200-108087400	Weak transcription	Fetal Brain Female	brain
33	chr9:108063800-108087400	Weak transcription	Fetal Lung	lung
34	chr9:108065400-108080600	Weak transcription	Primary B cells from cord blood	blood
35	chr9:108066200-108075200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr9:108066200-108076200	Enhancers	Stomach Mucosa	stomach
37	chr9:108066200-108098600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr9:108068400-108075400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr9:108068600-108075200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr9:108068600-108075400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr9:108068600-108075800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:108068800-108098600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr9:108069000-108104000	Weak transcription	Fetal Heart	heart
44	chr9:108070400-108080600	Weak transcription	Pancreas	Pancrea
45	chr9:108070400-108081600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:108070400-108087000	Weak transcription	Fetal Brain Male	brain
47	chr9:108070400-108091800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr9:108070400-108093400	Weak transcription	Gastric	stomach
49	chr9:108070400-108094600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr9:108070600-108081000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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