Variant report

Variant	rs6482542
Chromosome Location	chr10:26532929-26532930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10466098	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015011	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251044	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254792	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258601	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6482543	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126405	1.00[AMR][1000 genomes]
rs7897355	0.87[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7900313	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7909902	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7909909	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7911822	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190673	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26519200-26557800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26531400-26533200	Enhancers	Brain Germinal Matrix	brain
3	chr10:26531600-26533000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr10:26531800-26554800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:26532000-26533000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:26532600-26537400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:26532800-26537000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:26532800-26537000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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