Variant report

Variant	rs6484841
Chromosome Location	chr11:36418532-36418533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr11:36418252-36418549	K562	blood:	n/a	n/a

Variant related genes	Relation type
PRR5L	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11828593	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12281380	1.00[AMR][1000 genomes]
rs7952256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36400000-36425200	Weak transcription	Fetal Kidney	kidney
2	chr11:36400000-36425600	Weak transcription	HUVEC	blood vessel
3	chr11:36400200-36475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:36400600-36431200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:36400800-36443600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:36401000-36420200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:36402000-36424200	Weak transcription	Left Ventricle	heart
8	chr11:36402000-36431800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:36403000-36438200	Weak transcription	Ovary	ovary
10	chr11:36407200-36441800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:36407400-36425800	Weak transcription	Small Intestine	intestine
12	chr11:36408400-36433000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:36409400-36419600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:36409800-36430000	Weak transcription	Liver	Liver
15	chr11:36412000-36427600	Weak transcription	Placenta	Placenta
16	chr11:36413000-36418800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:36413000-36419600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:36413000-36420000	Weak transcription	Esophagus	oesophagus
19	chr11:36413000-36420800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:36413000-36471000	Weak transcription	Aorta	Aorta
21	chr11:36413200-36418800	Weak transcription	Brain Anterior Caudate	brain
22	chr11:36413200-36419600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:36413200-36441600	Weak transcription	HSMMtube	muscle
24	chr11:36413400-36430000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:36413800-36428400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:36414200-36426000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr11:36414800-36421000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr11:36414800-36428800	Weak transcription	Stomach Mucosa	stomach
29	chr11:36414800-36475600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr11:36415000-36429800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:36415200-36419800	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr11:36415200-36421000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:36415400-36418800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:36415400-36419000	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr11:36415400-36419200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:36415400-36419600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:36415400-36419800	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:36415400-36429400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:36415600-36418600	Strong transcription	NH-A	brain
40	chr11:36416000-36419600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:36416000-36419600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:36416000-36419800	Strong transcription	Fetal Intestine Large	intestine
43	chr11:36416000-36422600	Weak transcription	Thymus	Thymus
44	chr11:36416200-36420400	Weak transcription	Primary B cells from peripheral blood	blood
45	chr11:36416200-36421000	Weak transcription	GM12878-XiMat	blood
46	chr11:36416200-36421200	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr11:36416400-36420000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr11:36416400-36421000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr11:36416600-36419600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:36416600-36420200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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