Variant report

Variant	rs648556
Chromosome Location	chr1:72352237-72352238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11209854	0.80[CHB][hapmap]
rs11209861	0.84[EUR][1000 genomes]
rs11209862	0.86[CEU][hapmap]
rs11209864	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs11209867	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs12025922	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs12042645	0.80[EUR][1000 genomes]
rs12045130	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs12046440	0.81[EUR][1000 genomes]
rs12562379	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs12749167	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs12749550	0.85[CEU][hapmap]
rs1350648	0.80[CHB][hapmap]
rs1426179	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs1648263	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17091876	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1765607	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs35285032	0.83[EUR][1000 genomes]
rs3851882	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs3909664	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs474680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs495411	0.80[CHB][hapmap]
rs499314	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs508954	0.80[CHB][hapmap]
rs514435	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs516876	0.95[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs517901	0.80[CHB][hapmap]
rs518523	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs545538	0.80[CHB][hapmap]
rs554161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs577867	0.96[ASN][1000 genomes]
rs591540	0.81[CHD][hapmap]
rs618293	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs626185	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs628247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs629079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs652213	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs6683443	0.84[EUR][1000 genomes]
rs6683448	0.80[CHB][hapmap]
rs67094512	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948821	chr1:72049987-72477221	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003446	chr1:72060680-72419918	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817447	chr1:72098815-72558020	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1008210	chr1:72099161-72374197	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916783	chr1:72196061-72707953	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1007910	chr1:72247302-72543998	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2762150	chr1:72271227-72395953	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv870762	chr1:72300968-72376262	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv871908	chr1:72315820-72370014	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	nsv999162	chr1:72319163-72477496	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv534995	chr1:72319163-72477496	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72348600-72352600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:72349800-72353600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:72351000-72353200	Weak transcription	Fetal Kidney	kidney

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