Variant report

Variant	rs6486776
Chromosome Location	chr12:122057293-122057294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:122057261..122059571-chr12:122063040..122065967,3	MCF-7	breast:
2	chr12:122019678..122022044-chr12:122055209..122057856,2	K562	blood:
3	chr12:122057244..122059003-chr12:122062084..122064323,2	K562	blood:
4	chr12:122016347..122018426-chr12:122056776..122059452,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089094	Chromatin interaction
ENSG00000182500	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10770190	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1113409	0.81[EUR][1000 genomes]
rs11502393	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11610515	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12229447	0.88[ASN][1000 genomes]
rs12300327	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12308869	0.81[EUR][1000 genomes]
rs12313273	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12319775	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35989686	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4760125	0.81[EUR][1000 genomes]
rs59988934	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6486787	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6486795	0.85[AMR][1000 genomes]
rs7313601	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73227920	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73227933	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7398511	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053272	chr12:121956483-122132477	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122028800-122064000	Weak transcription	Right Atrium	heart
2	chr12:122048800-122062800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:122048800-122062800	Weak transcription	Fetal Intestine Small	intestine
4	chr12:122049400-122062800	Weak transcription	Thymus	Thymus
5	chr12:122049600-122057600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr12:122049600-122057800	Weak transcription	Placenta	Placenta
7	chr12:122049800-122062600	Weak transcription	Hela-S3	cervix
8	chr12:122050000-122057600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr12:122050000-122057600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr12:122050000-122057800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:122050000-122063800	Weak transcription	Fetal Stomach	stomach
12	chr12:122050200-122062800	Weak transcription	Colon Smooth Muscle	Colon
13	chr12:122051600-122057800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:122051800-122057800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr12:122053000-122062800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr12:122053400-122058200	Weak transcription	Fetal Thymus	thymus
17	chr12:122054200-122062200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr12:122054400-122057800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr12:122054600-122057400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr12:122055200-122057800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr12:122055400-122057600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr12:122056000-122058400	Enhancers	Primary B cells from peripheral blood	blood
23	chr12:122056200-122057800	Enhancers	HepG2	liver
24	chr12:122056400-122057600	Weak transcription	Fetal Muscle Leg	muscle
25	chr12:122056400-122058600	Enhancers	Primary B cells from cord blood	blood
26	chr12:122056600-122058000	Enhancers	A549	lung
27	chr12:122057000-122058800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr12:122057000-122062600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr12:122057200-122062600	Weak transcription	GM12878-XiMat	blood

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