Variant report

Variant	rs6487410
Chromosome Location	chr12:24902821-24902822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:24902134..24904126-chr12:24907515..24909258,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10047598	0.87[ASN][1000 genomes]
rs10437778	0.82[ASN][1000 genomes]
rs10437779	0.90[ASN][1000 genomes]
rs10505946	0.90[ASN][1000 genomes]
rs10505947	0.87[ASN][1000 genomes]
rs11047602	0.87[ASN][1000 genomes]
rs11047606	0.90[ASN][1000 genomes]
rs11047607	0.87[ASN][1000 genomes]
rs11047608	0.87[ASN][1000 genomes]
rs11047609	0.87[ASN][1000 genomes]
rs11047610	0.87[ASN][1000 genomes]
rs11047612	0.87[ASN][1000 genomes]
rs11047615	0.87[ASN][1000 genomes]
rs11609131	0.90[ASN][1000 genomes]
rs11610638	0.82[ASN][1000 genomes]
rs11612486	0.90[ASN][1000 genomes]
rs12299017	0.90[ASN][1000 genomes]
rs12305319	0.85[ASN][1000 genomes]
rs12320008	0.97[ASN][1000 genomes]
rs12322149	0.90[ASN][1000 genomes]
rs12810373	0.97[ASN][1000 genomes]
rs12816777	0.97[ASN][1000 genomes]
rs12828456	0.90[ASN][1000 genomes]
rs17368637	0.90[ASN][1000 genomes]
rs17368954	0.87[ASN][1000 genomes]
rs1982781	0.93[EUR][1000 genomes]
rs2354029	0.97[ASN][1000 genomes]
rs2354030	0.92[ASN][1000 genomes]
rs34292793	0.87[ASN][1000 genomes]
rs4963791	0.82[ASN][1000 genomes]
rs4963792	0.90[ASN][1000 genomes]
rs56346767	0.87[ASN][1000 genomes]
rs59386744	0.82[ASN][1000 genomes]
rs6487411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7135613	0.87[ASN][1000 genomes]
rs7300753	0.87[ASN][1000 genomes]
rs7304761	0.87[ASN][1000 genomes]
rs7305136	0.87[ASN][1000 genomes]
rs7305157	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7316656	0.87[ASN][1000 genomes]
rs73277701	0.87[ASN][1000 genomes]
rs7963816	0.93[EUR][1000 genomes]
rs7963898	0.93[EUR][1000 genomes]
rs964447	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422312	chr12:24519392-25221686	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1046463	chr12:24538432-24916851	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv898920	chr12:24648863-25147192	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv915555	chr12:24666481-24952013	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv469169	chr12:24692383-25357680	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv557775	chr12:24692383-25357680	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv932477	chr12:24705151-25346677	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv1053309	chr12:24770995-25078227	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
9	nsv1067577	chr12:24791283-25346677	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv529514	chr12:24791283-25346677	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv470278	chr12:24878591-24925239	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1041221	chr12:24880443-25213168	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	nsv541425	chr12:24880443-25213168	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
14	nsv469170	chr12:24891175-25204353	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
15	nsv557776	chr12:24891175-25204353	Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
16	nsv557777	chr12:24891175-25205241	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
17	nsv469173	chr12:24891175-25207653	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
18	nsv557778	chr12:24891175-25207653	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
19	nsv826283	chr12:24902154-24965379	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:24897600-24907600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr12:24898000-24907600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:24899200-24904000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:24899200-24905000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:24899600-24903200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:24899800-24903400	Enhancers	HepG2	liver
7	chr12:24900000-24903400	Weak transcription	NHLF	lung
8	chr12:24900600-24904000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr12:24900800-24903800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:24901000-24903800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr12:24901200-24903800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr12:24901400-24903200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:24901600-24903400	Weak transcription	Fetal Lung	lung
14	chr12:24901600-24909200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:24901600-24912800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr12:24901800-24903800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr12:24901800-24903800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr12:24902000-24903200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr12:24902000-24903600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr12:24902200-24907600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr12:24902400-24903400	Weak transcription	Ovary	ovary
22	chr12:24902400-24903600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr12:24902400-24905000	Enhancers	NH-A	brain
24	chr12:24902400-24907600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr12:24902600-24903400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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