Variant report

Variant	rs6487523
Chromosome Location	chr12:26160949-26160950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26158771..26161090-chr4:116678922..116681398,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11048375	0.95[ASN][1000 genomes]
rs2669554	0.91[ASN][1000 genomes]
rs2729660	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26145600-26163000	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:26146200-26163000	Weak transcription	Lung	lung
3	chr12:26148000-26163600	Weak transcription	Aorta	Aorta
4	chr12:26150800-26163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:26151000-26163000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:26151400-26162000	Weak transcription	Hela-S3	cervix
7	chr12:26152200-26162800	Weak transcription	HSMM	muscle
8	chr12:26154800-26163400	Weak transcription	HSMMtube	muscle
9	chr12:26155800-26163200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:26156000-26162800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr12:26156200-26161800	Weak transcription	Fetal Lung	lung
12	chr12:26156200-26163000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr12:26156400-26161600	Weak transcription	Brain Anterior Caudate	brain
14	chr12:26156400-26161800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr12:26156400-26161800	Weak transcription	Osteobl	bone
16	chr12:26156400-26162400	Weak transcription	Ovary	ovary
17	chr12:26156400-26162600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:26156400-26162600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr12:26156400-26163000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr12:26156400-26163400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr12:26156600-26162400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr12:26156600-26162800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr12:26156600-26162800	Weak transcription	NH-A	brain
24	chr12:26156600-26163600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr12:26157200-26161200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr12:26157400-26161000	Weak transcription	Psoas Muscle	Psoas
27	chr12:26157800-26161600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr12:26158600-26162600	Weak transcription	HMEC	breast
29	chr12:26158800-26162600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr12:26159400-26162800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr12:26160200-26161600	Enhancers	NHDF-Ad	bronchial
32	chr12:26160200-26162600	Enhancers	Stomach Smooth Muscle	stomach
33	chr12:26160400-26161000	Enhancers	Rectal Smooth Muscle	rectum
34	chr12:26160400-26161600	Weak transcription	Fetal Heart	heart
35	chr12:26160400-26162400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr12:26160400-26163000	Weak transcription	Right Ventricle	heart
37	chr12:26160600-26161600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr12:26160600-26161800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr12:26160600-26161800	Weak transcription	Right Atrium	heart
40	chr12:26160600-26162000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr12:26160600-26162400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr12:26160600-26162400	Weak transcription	Brain Substantia Nigra	brain
43	chr12:26160600-26162400	Weak transcription	Left Ventricle	heart
44	chr12:26160600-26163000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr12:26160600-26163000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr12:26160600-26163000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr12:26160600-26163200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr12:26160600-26163200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr12:26160600-26163200	Weak transcription	Pancreas	Pancrea
50	chr12:26160600-26163400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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