Variant report

Variant	rs6489203
Chromosome Location	chr12:123165081-123165082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:123163325..123167706-chr12:123172558..123174898,3	MCF-7	breast:
2	chr12:123143377..123146138-chr12:123164475..123166669,2	MCF-7	breast:
3	chr12:123164745..123167485-chr12:123170357..123173232,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256249	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11059384	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1696336	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1696345	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1798218	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1798219	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2244689	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2262194	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2454702	0.83[ASN][1000 genomes]
rs2454722	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2649991	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3104613	0.82[ASN][1000 genomes]
rs3104614	0.82[ASN][1000 genomes]
rs34699072	0.84[ASN][1000 genomes]
rs35683065	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3922628	0.83[ASN][1000 genomes]
rs4759361	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4759364	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4759404	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs488635	0.84[ASN][1000 genomes]
rs491489	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs492699	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs507525	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs509548	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs525215	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs526276	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs537527	0.84[ASN][1000 genomes]
rs545234	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs562042	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs568853	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs580063	0.81[ASN][1000 genomes]
rs582452	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs582856	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs585465	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs589154	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs601339	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs630408	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs632393	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs635400	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs643285	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs645491	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs662889	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71456771	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7296217	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7956284	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7966605	0.81[ASN][1000 genomes]
rs7969523	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123162600-123166400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:123163000-123167600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:123163200-123166400	Enhancers	Primary B cells from cord blood	blood
4	chr12:123163600-123166200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr12:123163800-123165400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr12:123164200-123166000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:123164200-123166000	Enhancers	HepG2	liver
8	chr12:123164200-123171600	Weak transcription	Esophagus	oesophagus
9	chr12:123164200-123171800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr12:123164600-123165800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:123164600-123166000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr12:123164600-123166000	Weak transcription	Placenta	Placenta
13	chr12:123164600-123166200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:123164600-123166200	Weak transcription	Adipose Nuclei	Adipose
15	chr12:123164600-123166400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr12:123164600-123166400	Weak transcription	Hela-S3	cervix
17	chr12:123164800-123165800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr12:123164800-123166000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:123164800-123166000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr12:123164800-123166000	Weak transcription	GM12878-XiMat	blood
21	chr12:123164800-123166000	Weak transcription	HSMMtube	muscle
22	chr12:123164800-123166000	Weak transcription	NHDF-Ad	bronchial
23	chr12:123164800-123166200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr12:123164800-123166200	Weak transcription	A549	lung
25	chr12:123164800-123166200	Weak transcription	NHLF	lung
26	chr12:123164800-123166200	Weak transcription	Osteobl	bone
27	chr12:123164800-123166400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr12:123165000-123165400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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