Variant report

Variant	rs6490237
Chromosome Location	chr12:119565160-119565161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10744735	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11064674	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11064677	1.00[CEU][hapmap];0.89[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4073207	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4075946	0.87[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4265644	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6490236	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[EUR][1000 genomes]
rs7136574	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7138303	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7298308	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7298583	0.84[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7309398	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7311511	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7311624	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7314993	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7316343	0.80[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7954884	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119535200-119568800	Weak transcription	Fetal Brain Male	brain
2	chr12:119553600-119567600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:119553800-119569000	Weak transcription	Brain Angular Gyrus	brain
4	chr12:119560600-119567000	Strong transcription	Brain Germinal Matrix	brain
5	chr12:119561000-119568000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:119563800-119568000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr12:119564600-119566000	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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