Variant report

Variant	rs6492220
Chromosome Location	chr13:110359109-110359110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:110228879..110230744-chr13:110356982..110359196,2	MCF-7	breast:
2	chr13:110358996..110361391-chr13:110378038..110380639,2	K562	blood:
3	chr13:110351496..110354241-chr13:110356886..110361111,4	K562	blood:
4	chr13:110357646..110363489-chr13:110367118..110372091,7	K562	blood:
5	chr13:110357966..110359817-chr13:110436770..110439771,3	K562	blood:
6	chr13:110352177..110356373-chr13:110357272..110361111,4	K562	blood:
7	chr13:110350767..110352519-chr13:110358277..110361113,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000234854	Chromatin interaction
ENSG00000185950	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57251560	0.84[AFR][1000 genomes]
rs57484686	0.96[AFR][1000 genomes]
rs73617861	1.00[AFR][1000 genomes]
rs73617873	1.00[AFR][1000 genomes]
rs7989944	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051686	chr13:110283468-110362954	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110356000-110359200	Genic enhancers	Dnd41	blood
2	chr13:110357000-110359800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:110357000-110360600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr13:110357200-110359800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:110357200-110359800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
6	chr13:110357200-110360600	Enhancers	Fetal Thymus	thymus
7	chr13:110357400-110360200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr13:110357800-110360200	Enhancers	Primary B cells from cord blood	blood
9	chr13:110358000-110359200	Weak transcription	A549	lung
10	chr13:110358000-110359800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr13:110358000-110359800	Enhancers	Hela-S3	cervix
12	chr13:110358000-110361000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:110358000-110361000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr13:110358400-110359400	Enhancers	K562	blood
15	chr13:110358600-110360000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr13:110358600-110361000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr13:110358600-110363200	Weak transcription	Liver	Liver
18	chr13:110358800-110359800	Enhancers	Primary B cells from peripheral blood	blood
19	chr13:110358800-110360000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr13:110359000-110360200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr13:110359000-110367800	Weak transcription	Monocytes-CD14+_RO01746	blood

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