Variant report

Variant	rs6492238
Chromosome Location	chr13:110710117-110710118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61361143	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110707600-110714600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:110707800-110714200	Weak transcription	HSMMtube	muscle
3	chr13:110708200-110714200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:110709600-110711000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr13:110709600-110714200	Weak transcription	NHEK	skin
6	chr13:110709600-110714400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr13:110709800-110711000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:110710000-110710200	Enhancers	Aorta	Aorta
9	chr13:110710000-110710800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:110710000-110714000	Weak transcription	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links