Variant report

Variant	rs6492657
Chromosome Location	chr13:93940739-93940740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1323994	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1323995	0.92[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1323998	0.83[JPT][hapmap]
rs1475449	0.80[CHB][hapmap];0.85[EUR][1000 genomes]
rs4773730	1.00[CEU][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6492658	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7320636	0.81[EUR][1000 genomes]
rs7320857	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7321055	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7338482	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7338914	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7339375	0.96[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7996507	0.96[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs9301865	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9516212	0.96[CEU][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9516216	0.96[CEU][hapmap];0.81[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9524003	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9524010	0.96[CEU][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs963206	0.96[CEU][hapmap];0.81[CHB][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2751156	chr13:93912999-93988638	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93924400-93942000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:93929000-93953800	Weak transcription	Right Atrium	heart
3	chr13:93932400-93952200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:93934800-93942200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:93934800-93945800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:93938400-93943000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:93938800-93946000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr13:93939000-93945800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:93939200-93945600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr13:93939800-93941000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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