Variant report

Variant	rs6492929
Chromosome Location	chr15:40389286-40389287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40388598..40390113-chr15:40390447..40392056,2	K562	blood:
2	chr15:40389103..40392679-chr15:40452401..40455332,4	K562	blood:
3	chr15:39872166..39874631-chr15:40388813..40390537,2	MCF-7	breast:
4	chr15:40389070..40391081-chr15:40419316..40421072,2	K562	blood:
5	chr15:40379880..40384314-chr15:40386410..40389357,4	K562	blood:
6	chr15:40372039..40375867-chr15:40386826..40392262,4	K562	blood:
7	chr15:40336782..40338579-chr15:40387773..40390430,2	MCF-7	breast:
8	chr15:40388597..40390833-chr15:40440085..40442294,2	K562	blood:
9	chr15:40384830..40387803-chr15:40388131..40391380,3	K562	blood:
10	chr15:40339113..40341248-chr15:40387682..40389325,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000156970	Chromatin interaction
ENSG00000137801	Chromatin interaction
ENSG00000259409	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10152521	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs488318	0.93[EUR][1000 genomes]
rs568800	0.80[EUR][1000 genomes]
rs672873	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40381000-40390200	Genic enhancers	Fetal Stomach	stomach
2	chr15:40381800-40390200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:40382000-40389600	Weak transcription	Aorta	Aorta
4	chr15:40383400-40394000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr15:40383600-40389600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr15:40383600-40390400	Genic enhancers	Fetal Thymus	thymus
7	chr15:40383600-40390800	Genic enhancers	Fetal Intestine Small	intestine
8	chr15:40384000-40389800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr15:40384000-40389800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:40384000-40390600	Enhancers	Primary B cells from cord blood	blood
11	chr15:40384200-40390000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:40384200-40392400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:40384800-40389800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:40385000-40390600	Weak transcription	Fetal Brain Female	brain
15	chr15:40385200-40390400	Enhancers	Primary T cells from cord blood	blood
16	chr15:40385400-40390000	Weak transcription	Osteobl	bone
17	chr15:40385400-40390200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:40385600-40389800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:40385600-40389800	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr15:40385600-40390000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:40385600-40390200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr15:40385600-40390600	Weak transcription	Fetal Brain Male	brain
23	chr15:40385800-40389400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:40385800-40389600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:40385800-40390000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:40385800-40390000	Enhancers	Stomach Smooth Muscle	stomach
27	chr15:40385800-40390200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:40386000-40390000	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr15:40386000-40390400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:40386000-40390600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr15:40386200-40389800	Weak transcription	HSMM	muscle
32	chr15:40386200-40390000	Enhancers	HepG2	liver
33	chr15:40386600-40390400	Genic enhancers	Thymus	Thymus
34	chr15:40386800-40389400	Weak transcription	Colonic Mucosa	Colon
35	chr15:40386800-40390000	Weak transcription	Esophagus	oesophagus
36	chr15:40386800-40390200	Enhancers	Rectal Smooth Muscle	rectum
37	chr15:40387000-40389400	Enhancers	Placenta Amnion	Placenta Amnion
38	chr15:40387000-40389800	Genic enhancers	Primary monocytes fromperipheralblood	blood
39	chr15:40387200-40389800	Enhancers	Adipose Nuclei	Adipose
40	chr15:40387200-40390000	Enhancers	K562	blood
41	chr15:40387200-40392800	Enhancers	Fetal Intestine Large	intestine
42	chr15:40387200-40395600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:40387200-40397800	Enhancers	Fetal Muscle Leg	muscle
44	chr15:40387400-40390200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:40387400-40390800	Enhancers	Primary B cells from peripheral blood	blood
46	chr15:40387400-40395200	Enhancers	NHLF	lung
47	chr15:40387600-40389800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr15:40387600-40390400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:40387600-40390400	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr15:40387600-40391400	Enhancers	Psoas Muscle	Psoas

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