Variant report

Variant rs6492940
Chromosome Location chr15:40563701-40563702
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:40546000-40571800 Weak transcription Right Ventricle heart
2 chr15:40546200-40568200 Weak transcription Duodenum Mucosa Duodenum
3 chr15:40550000-40568000 Weak transcription Spleen Spleen
4 chr15:40550400-40566800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr15:40551400-40571000 Weak transcription H9 Cell Line embryonic stem cell
6 chr15:40553800-40570400 Strong transcription Breast Myoepithelial Primary Cells Breast
7 chr15:40555400-40566600 Weak transcription Brain Inferior Temporal Lobe brain
8 chr15:40556200-40567400 Strong transcription Fetal Intestine Small intestine
9 chr15:40556200-40567600 Weak transcription Colonic Mucosa Colon
10 chr15:40557000-40568200 Weak transcription Lung lung
11 chr15:40557200-40571800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr15:40557400-40566800 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr15:40559000-40564600 Weak transcription Gastric stomach
14 chr15:40559000-40570000 Weak transcription Brain Anterior Caudate brain
15 chr15:40559200-40568000 Weak transcription Brain Germinal Matrix brain
16 chr15:40559200-40570000 Weak transcription HUES48 Cell Line embryonic stem cell
17 chr15:40559400-40570200 Weak transcription Brain Angular Gyrus brain
18 chr15:40559400-40571600 Weak transcription Brain Hippocampus Middle brain
19 chr15:40559600-40564600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr15:40559600-40567200 Weak transcription Stomach Mucosa stomach
21 chr15:40559600-40568800 Weak transcription Fetal Brain Female brain
22 chr15:40559600-40569000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr15:40559600-40569200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr15:40559600-40570000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr15:40559600-40570400 Strong transcription Esophagus oesophagus
26 chr15:40559600-40571800 Weak transcription Placenta Amnion Placenta Amnion
27 chr15:40559800-40564000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr15:40559800-40567000 Strong transcription Fetal Adrenal Gland Adrenal Gland
29 chr15:40560200-40566600 Weak transcription K562 blood
30 chr15:40560200-40568200 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr15:40560400-40564600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr15:40560400-40566600 Weak transcription H1 Cell Line embryonic stem cell
33 chr15:40560600-40567200 Weak transcription iPS-15b Cell Line embryonic stem cell
34 chr15:40560600-40567200 Weak transcription iPS-18 Cell Line embryonic stem cell
35 chr15:40560800-40571800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr15:40561000-40563800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr15:40561000-40564400 Weak transcription Pancreas Pancrea
38 chr15:40561000-40564600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr15:40561800-40567200 Weak transcription iPS-20b Cell Line embryonic stem cell
40 chr15:40562000-40565400 Weak transcription Fetal Intestine Large intestine
41 chr15:40562200-40566800 Weak transcription ES-WA7 Cell Line embryonic stem cell
42 chr15:40562600-40567000 Strong transcription HMEC breast
43 chr15:40562800-40566400 Strong transcription Placenta Placenta
44 chr15:40563000-40564400 Weak transcription NHEK skin
45 chr15:40563200-40564200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
46 chr15:40563400-40564600 Enhancers Liver Liver
47 chr15:40563600-40563800 Bivalent Enhancer HepG2 liver
48 chr15:40563600-40564400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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