Variant report

Variant	rs6493073
Chromosome Location	chr15:43271999-43272000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2037393	1.00[EUR][1000 genomes]
rs2412751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4421951	1.00[AMR][1000 genomes]
rs545430	1.00[EUR][1000 genomes]
rs573201	1.00[EUR][1000 genomes]
rs6493072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7163205	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7166596	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174240	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv904134	chr15:43097652-43357406	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv904135	chr15:43143998-43392075	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1036512	chr15:43164906-43274531	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv569239	chr15:43201109-43392075	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv1039587	chr15:43204351-43378274	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1050987	chr15:43237103-43385515	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv542369	chr15:43237103-43385515	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv3421859	chr15:43249285-43280570	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv904136	chr15:43257475-43482127	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
16	nsv904137	chr15:43268970-43392075	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv904138	chr15:43268970-43414673	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv904139	chr15:43268970-43482127	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
19	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43232000-43362800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:43244000-43276400	Weak transcription	Psoas Muscle	Psoas
3	chr15:43248000-43320600	Weak transcription	Stomach Mucosa	stomach
4	chr15:43249600-43283200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:43252400-43298400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:43252800-43295800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:43255200-43278800	Weak transcription	Esophagus	oesophagus
8	chr15:43258800-43277600	Weak transcription	Colonic Mucosa	Colon
9	chr15:43261000-43277000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:43262400-43276800	Strong transcription	Primary B cells from peripheral blood	blood
11	chr15:43262600-43272200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr15:43262600-43292000	Strong transcription	Fetal Muscle Trunk	muscle
13	chr15:43263400-43284000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:43264000-43283000	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr15:43265400-43275400	Strong transcription	NH-A	brain
16	chr15:43265800-43275600	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:43265800-43277200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:43265800-43278800	Weak transcription	NHLF	lung
19	chr15:43265800-43283600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:43265800-43296800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:43266000-43292200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:43266400-43294800	Weak transcription	Pancreas	Pancrea
23	chr15:43266800-43286800	Weak transcription	A549	lung
24	chr15:43267000-43276400	Weak transcription	Brain Substantia Nigra	brain
25	chr15:43267200-43272800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:43267200-43278600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:43267200-43278800	Weak transcription	Gastric	stomach
28	chr15:43267200-43278800	Weak transcription	Spleen	Spleen
29	chr15:43267200-43323000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr15:43267400-43272800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:43268200-43272800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:43268200-43272800	Weak transcription	Fetal Stomach	stomach
33	chr15:43268200-43274000	Weak transcription	NHEK	skin
34	chr15:43268200-43278800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:43268600-43273600	Weak transcription	Colon Smooth Muscle	Colon
36	chr15:43268800-43274800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:43269000-43274600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr15:43269000-43277600	Weak transcription	Right Ventricle	heart
39	chr15:43269000-43296800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr15:43269000-43298400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr15:43269000-43312800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:43269200-43272600	Weak transcription	Fetal Kidney	kidney
43	chr15:43269200-43275000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr15:43269200-43397200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr15:43269400-43278800	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr15:43269600-43272600	Weak transcription	Fetal Intestine Large	intestine
47	chr15:43269600-43272800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr15:43269600-43272800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr15:43269600-43272800	Weak transcription	HSMMtube	muscle
50	chr15:43269600-43273000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links