Variant report

Variant	rs6493884
Chromosome Location	chr15:57024930-57024931
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:56989844..56991696-chr15:57023629..57025525,2	MCF-7	breast:
2	chr15:57024542..57026335-chr15:57210196..57212175,2	K562	blood:
3	chr15:57023926..57025513-chr15:57178934..57180893,2	K562	blood:
4	chr15:57022824..57025649-chr15:57612283..57614634,3	K562	blood:
5	chr15:57023111..57027218-chr15:57209095..57213054,4	K562	blood:
6	chr15:57022824..57027100-chr15:57611258..57614634,3	K562	blood:
7	chr15:56999062..57001613-chr15:57024278..57025915,2	MCF-7	breast:
8	chr15:56997588..57000196-chr15:57024112..57025817,2	K562	blood:
9	chr1:149223243..149225441-chr15:57024407..57026352,2	MCF-7	breast:
10	chr15:56997588..56999927-chr15:57024317..57027282,2	K562	blood:
11	chr15:57023339..57026885-chr15:57210242..57212303,3	MCF-7	breast:
12	chr15:57006002..57008817-chr15:57023119..57025487,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MNS1-9	chr15:57024802-57025222	NONHSAT044030

No data

Variant related genes	Relation type
ENSG00000206737	Chromatin interaction
ENSG00000137871	Chromatin interaction
ENSG00000140262	Chromatin interaction
ENSG00000260172	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3449418	chr15:57024810-57026908	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57012400-57025000	Weak transcription	Spleen	Spleen
2	chr15:57023400-57025200	Flanking Active TSS	Primary T cells from cord blood	blood
3	chr15:57023600-57025000	Weak transcription	Gastric	stomach
4	chr15:57023600-57025800	Active TSS	Thymus	Thymus
5	chr15:57023800-57025000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:57023800-57025000	Flanking Active TSS	Fetal Brain Male	brain
7	chr15:57023800-57025200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:57023800-57025200	Flanking Active TSS	Osteobl	bone
9	chr15:57023800-57025400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr15:57023800-57025400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:57023800-57025400	Flanking Active TSS	HUVEC	blood vessel
12	chr15:57024000-57025000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr15:57024000-57025000	Flanking Active TSS	Dnd41	blood
14	chr15:57024000-57025000	Flanking Active TSS	Hela-S3	cervix
15	chr15:57024000-57025000	Flanking Active TSS	NHEK	skin
16	chr15:57024000-57025200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr15:57024000-57025400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr15:57024000-57025400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:57024000-57025400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:57024000-57025800	Active TSS	Right Ventricle	heart
21	chr15:57024200-57025000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:57024200-57025200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr15:57024200-57025200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:57024200-57025200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr15:57024200-57025400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr15:57024200-57025400	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr15:57024200-57025400	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr15:57024200-57025400	Active TSS	Right Atrium	heart
29	chr15:57024200-57025800	Active TSS	Colonic Mucosa	Colon
30	chr15:57024200-57025800	Active TSS	Left Ventricle	heart
31	chr15:57024200-57026000	Active TSS	Fetal Muscle Trunk	muscle
32	chr15:57024200-57026000	Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr15:57024200-57026200	Active TSS	Aorta	Aorta
34	chr15:57024200-57026200	Active TSS	Ovary	ovary
35	chr15:57024200-57026200	Active TSS	Psoas Muscle	Psoas
36	chr15:57024200-57026400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:57024400-57025000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:57024400-57025000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:57024400-57025000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:57024400-57025000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:57024400-57025000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr15:57024400-57025000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:57024400-57025200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr15:57024400-57025200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr15:57024400-57025200	Flanking Active TSS	Primary B cells from peripheral blood	blood
46	chr15:57024400-57025200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chr15:57024400-57025200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr15:57024400-57025200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:57024400-57025200	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
50	chr15:57024400-57025400	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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