Variant report

Variant	rs6494066
Chromosome Location	chr15:59351821-59351822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59350026..59352354-chr15:59361396..59363000,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57057009	0.85[ASN][1000 genomes]
rs57452205	0.94[ASN][1000 genomes]
rs57750394	0.80[ASN][1000 genomes]
rs60533405	0.85[ASN][1000 genomes]
rs60899149	0.94[ASN][1000 genomes]
rs60964484	1.00[ASN][1000 genomes]
rs74017339	0.80[ASN][1000 genomes]
rs74017345	1.00[ASN][1000 genomes]
rs74017367	0.83[AMR][1000 genomes]
rs8043536	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv510663	chr15:59310676-59370041	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59281200-59352600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:59281800-59352200	Weak transcription	Aorta	Aorta
3	chr15:59281800-59353400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:59283800-59359000	Weak transcription	Fetal Brain Male	brain
5	chr15:59305400-59354400	Weak transcription	Gastric	stomach
6	chr15:59306000-59353400	Weak transcription	Fetal Heart	heart
7	chr15:59308400-59358000	Weak transcription	Spleen	Spleen
8	chr15:59309200-59359000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:59323600-59359000	Weak transcription	Esophagus	oesophagus
10	chr15:59325000-59354800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:59325400-59352000	Weak transcription	Fetal Lung	lung
12	chr15:59326400-59365200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:59329200-59352200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:59329200-59352600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:59329400-59352600	Weak transcription	Pancreas	Pancrea
16	chr15:59332400-59358200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:59335800-59354400	Weak transcription	Psoas Muscle	Psoas
18	chr15:59339800-59352600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:59340000-59352600	Weak transcription	Ovary	ovary
20	chr15:59341000-59353600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:59342400-59364400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:59342400-59365400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:59344200-59356200	Strong transcription	K562	blood
24	chr15:59344200-59364400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:59344200-59364400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:59344400-59354600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:59344400-59356200	Strong transcription	A549	lung
28	chr15:59344400-59358000	Weak transcription	Right Ventricle	heart
29	chr15:59344400-59363200	Strong transcription	Duodenum Mucosa	Duodenum
30	chr15:59344400-59364200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr15:59344400-59392800	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr15:59344600-59363200	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr15:59344600-59363800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:59344600-59363800	Strong transcription	Fetal Thymus	thymus
35	chr15:59344800-59352200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr15:59344800-59353400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr15:59344800-59353600	Strong transcription	Primary B cells from peripheral blood	blood
38	chr15:59344800-59354600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr15:59344800-59354800	Strong transcription	Osteobl	bone
40	chr15:59344800-59355000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:59344800-59355000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:59344800-59363000	Strong transcription	Hela-S3	cervix
43	chr15:59344800-59363200	Strong transcription	Primary B cells from cord blood	blood
44	chr15:59344800-59363800	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr15:59344800-59363800	Strong transcription	Dnd41	blood
46	chr15:59344800-59364600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr15:59344800-59364600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:59344800-59366400	Strong transcription	Placenta	Placenta
49	chr15:59344800-59370400	Strong transcription	Primary T cells from cord blood	blood
50	chr15:59345000-59352200	Weak transcription	Brain Substantia Nigra	brain

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