Variant report

Variant	rs6494087
Chromosome Location	chr15:59543909-59543910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59536729..59539462-chr15:59542944..59544488,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs3794488	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4774323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57487429	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58579379	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59773793	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62002697	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6494079	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6494080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6494084	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6494086	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6494089	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7172489	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7172761	0.90[ASN][1000 genomes]
rs7174147	0.90[ASN][1000 genomes]
rs7175876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7179352	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7181249	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8027055	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8027766	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8038705	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8040147	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833027	chr15:59474806-59608544	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv904272	chr15:59500577-59549018	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv904273	chr15:59518488-59567137	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59511400-59549200	Weak transcription	Colonic Mucosa	Colon
2	chr15:59515800-59566600	Weak transcription	Pancreas	Pancrea
3	chr15:59517600-59546400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:59517800-59564200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:59521600-59566400	Weak transcription	Psoas Muscle	Psoas
6	chr15:59524000-59546200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:59524600-59569200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:59524600-59574600	Weak transcription	Lung	lung
9	chr15:59525000-59546400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:59525200-59547800	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:59525200-59554000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:59525200-59566600	Weak transcription	Small Intestine	intestine
13	chr15:59525200-59582000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:59529200-59547200	Weak transcription	Aorta	Aorta
15	chr15:59529200-59547800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:59529800-59545000	Weak transcription	HepG2	liver
17	chr15:59530200-59548000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:59530600-59558200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr15:59530600-59568000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:59530800-59549400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr15:59530800-59569000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr15:59532800-59544200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:59533400-59559800	Weak transcription	NHLF	lung
24	chr15:59533400-59564000	Weak transcription	Ovary	ovary
25	chr15:59533400-59566800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr15:59534400-59547800	Genic enhancers	A549	lung
27	chr15:59536000-59547800	Genic enhancers	Hela-S3	cervix
28	chr15:59536200-59548000	Weak transcription	Stomach Mucosa	stomach
29	chr15:59536600-59559000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:59537000-59547800	Weak transcription	HSMMtube	muscle
31	chr15:59539200-59546400	Weak transcription	NH-A	brain
32	chr15:59539200-59546600	Weak transcription	HMEC	breast
33	chr15:59540000-59551200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:59540000-59560000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr15:59540000-59568800	Weak transcription	Fetal Kidney	kidney
36	chr15:59540200-59548000	Weak transcription	Fetal Heart	heart
37	chr15:59540200-59549400	Weak transcription	HUVEC	blood vessel
38	chr15:59540400-59552600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr15:59540600-59561400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:59540800-59544600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:59540800-59544600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:59541000-59554000	Weak transcription	Right Ventricle	heart
43	chr15:59541000-59558000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr15:59541200-59549400	Weak transcription	Adipose Nuclei	Adipose
45	chr15:59541200-59566400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr15:59541800-59544600	Enhancers	Primary B cells from cord blood	blood
47	chr15:59542000-59545800	Strong transcription	NHEK	skin
48	chr15:59542000-59548400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr15:59542200-59550600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr15:59542400-59547400	Weak transcription	Placenta	Placenta

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