Variant report

Variant	rs649446
Chromosome Location	chr11:73695845-73695846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr11:73693622-73695911	K562	blood:	n/a	chr11:73694793-73694800
2	CTCF	chr11:73695782-73695846	LNCaP	prostate:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73695027..73697891-chr11:73799212..73800903,2	K562	blood:
2	chr11:73692800..73696318-chr11:73880815..73883748,5	MCF-7	breast:
3	chr11:73695224..73696855-chr11:73720441..73722430,2	MCF-7	breast:
4	chr11:73691904..73697409-chr11:73796369..73799985,7	K562	blood:
5	chr11:73693723..73696564-chr11:73880690..73883464,7	K562	blood:
6	chr11:73690232..73696227-chr11:73800984..73805427,5	MCF-7	breast:
7	chr11:73691754..73696567-chr11:73778152..73784121,11	MCF-7	breast:
8	chr11:73690208..73697157-chr11:73720249..73724103,9	K562	blood:
9	chr11:73694022..73695981-chr11:73881444..73883965,2	MCF-7	breast:

No data

Variant related genes	Relation type
UCP2	TF binding region
ENSG00000175564	Chromatin interaction
ENSG00000168014	Chromatin interaction
ENSG00000214517	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11235965	0.81[ASN][1000 genomes]
rs2515088	0.87[ASN][1000 genomes]
rs619631	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs625347	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs642154	0.93[ASN][1000 genomes]
rs643064	0.93[ASN][1000 genomes]
rs680786	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs681826	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7109266	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73694600-73696000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:73694600-73696000	Flanking Active TSS	K562	blood
3	chr11:73694800-73696000	Enhancers	Primary hematopoietic stem cells	blood
4	chr11:73695000-73696000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:73695000-73696000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:73695000-73696000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:73695000-73696000	Enhancers	Fetal Thymus	thymus
8	chr11:73695000-73696200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:73695000-73696200	Enhancers	Fetal Muscle Trunk	muscle
10	chr11:73695000-73696200	Enhancers	Fetal Muscle Leg	muscle
11	chr11:73695200-73696000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr11:73695200-73696000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:73695200-73696000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr11:73695200-73696000	Enhancers	Dnd41	blood
15	chr11:73695200-73696000	Enhancers	HepG2	liver
16	chr11:73695200-73696000	Enhancers	HSMMtube	muscle
17	chr11:73695200-73696200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:73695200-73696800	Enhancers	GM12878-XiMat	blood
19	chr11:73695200-73702400	Weak transcription	Right Atrium	heart
20	chr11:73695200-73711000	Weak transcription	Fetal Intestine Small	intestine
21	chr11:73695400-73696000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr11:73695400-73696000	Enhancers	Primary B cells from peripheral blood	blood
23	chr11:73695400-73696000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr11:73695400-73696000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr11:73695400-73696000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr11:73695400-73697000	Weak transcription	Spleen	Spleen
27	chr11:73695600-73696000	Enhancers	Primary T cells fromperipheralblood	blood
28	chr11:73695600-73696000	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr11:73695600-73696000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr11:73695600-73696200	Enhancers	Primary B cells from cord blood	blood
31	chr11:73695600-73696200	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr11:73695600-73696800	Enhancers	Primary T cells from cord blood	blood
33	chr11:73695800-73696000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr11:73695800-73696000	Enhancers	Psoas Muscle	Psoas
35	chr11:73695800-73696000	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr11:73695800-73696200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links