Variant report

Variant	rs6494838
Chromosome Location	chr15:33317037-33317038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11072131	0.83[JPT][hapmap]
rs11072136	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1450114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2879367	0.84[EUR][1000 genomes]
rs7162923	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7175174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7180389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1041609	chr15:33148035-33355999	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv542339	chr15:33148035-33355999	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33306800-33321000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:33311200-33318000	Weak transcription	Thymus	Thymus
3	chr15:33312600-33317200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:33314800-33319000	Weak transcription	Fetal Kidney	kidney
5	chr15:33315000-33320400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:33315200-33317600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:33315200-33318000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:33315200-33318200	Weak transcription	Psoas Muscle	Psoas
9	chr15:33315200-33318200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:33315200-33318200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:33315200-33318800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:33315200-33318800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:33315200-33319600	Weak transcription	Adipose Nuclei	Adipose
14	chr15:33315200-33320000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:33315200-33321800	Weak transcription	Colonic Mucosa	Colon
16	chr15:33315200-33323400	Weak transcription	Esophagus	oesophagus
17	chr15:33315200-33323400	Weak transcription	NH-A	brain
18	chr15:33315200-33329400	Weak transcription	Pancreas	Pancrea
19	chr15:33315400-33317200	Weak transcription	NHDF-Ad	bronchial
20	chr15:33315400-33317400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:33315400-33317400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:33315400-33318200	Weak transcription	Stomach Mucosa	stomach
23	chr15:33315400-33318200	Weak transcription	HSMMtube	muscle
24	chr15:33315400-33318800	Weak transcription	Fetal Muscle Leg	muscle
25	chr15:33315400-33335400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:33315600-33317200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr15:33315600-33318200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:33315600-33318200	Weak transcription	Fetal Thymus	thymus
29	chr15:33315600-33318800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:33315600-33319600	Weak transcription	NHEK	skin
31	chr15:33315600-33323600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:33315800-33320000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr15:33315800-33323200	Weak transcription	HMEC	breast
34	chr15:33316000-33317200	Weak transcription	HSMM	muscle
35	chr15:33316000-33317400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:33316000-33317400	Weak transcription	Osteobl	bone
37	chr15:33316000-33318000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:33316000-33320000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr15:33316800-33317400	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr15:33316800-33322600	Enhancers	NHLF	lung

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