Variant report

Variant	rs6495630
Chromosome Location	chr15:82201693-82201694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:82197635..82199203-chr15:82200409..82202633,2	MCF-7	breast:
2	chr15:82199396..82202626-chr15:82203971..82207747,3	K562	blood:
3	chr15:82191848..82193943-chr15:82199177..82201700,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs60300786	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758390	chr15:81941520-82224069	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2760045	chr15:81941520-82224069	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv427964	chr15:81941520-82293593	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv523340	chr15:82157555-82265101	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1042198	chr15:82193633-82253240	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82198200-82201800	Weak transcription	Psoas Muscle	Psoas
2	chr15:82200400-82202000	Enhancers	Left Ventricle	heart
3	chr15:82200400-82202400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:82200400-82204000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:82200400-82205000	Enhancers	Colon Smooth Muscle	Colon
6	chr15:82200400-82205200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:82200400-82206000	Enhancers	Rectal Smooth Muscle	rectum
8	chr15:82200400-82209000	Enhancers	Fetal Muscle Leg	muscle
9	chr15:82200400-82209000	Enhancers	Fetal Stomach	stomach
10	chr15:82200600-82201800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:82200600-82201800	Weak transcription	Ovary	ovary
12	chr15:82200600-82202000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:82200600-82202000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:82200600-82202200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:82200600-82202400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr15:82200600-82202600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr15:82200600-82204400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:82200600-82206200	Weak transcription	Right Atrium	heart
19	chr15:82200800-82201800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:82200800-82204400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:82201000-82202000	Enhancers	Right Ventricle	heart
22	chr15:82201000-82204800	Enhancers	Fetal Heart	heart
23	chr15:82201000-82204800	Enhancers	Fetal Lung	lung
24	chr15:82201000-82206800	Enhancers	Stomach Smooth Muscle	stomach
25	chr15:82201200-82202200	Enhancers	Adipose Nuclei	Adipose
26	chr15:82201200-82202600	Enhancers	H1 Cell Line	embryonic stem cell
27	chr15:82201200-82203400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr15:82201200-82204200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:82201400-82201800	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr15:82201400-82202400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr15:82201400-82207800	Enhancers	Fetal Muscle Trunk	muscle
32	chr15:82201400-82237600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr15:82201600-82202000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr15:82201600-82202200	Enhancers	Primary hematopoietic stem cells	blood
35	chr15:82201600-82202800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr15:82201600-82204000	Enhancers	Fetal Brain Male	brain
37	chr15:82201600-82204800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:82201600-82205000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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