Variant report

Variant	rs6496867
Chromosome Location	chr15:92465257-92465258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10775254	0.80[AFR][1000 genomes]
rs4598887	0.85[ASN][1000 genomes]
rs6496869	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8041346	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92451800-92470200	Weak transcription	Small Intestine	intestine
2	chr15:92453400-92466400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr15:92457000-92465600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:92457200-92467800	Weak transcription	Fetal Thymus	thymus
5	chr15:92457400-92470000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:92457600-92469600	Weak transcription	Hela-S3	cervix
7	chr15:92458400-92466400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr15:92459000-92467600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:92459400-92466200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:92459400-92467200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:92459400-92467800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:92459600-92466200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:92459600-92468800	Weak transcription	Colonic Mucosa	Colon
14	chr15:92460600-92472000	Enhancers	Right Atrium	heart
15	chr15:92460800-92466800	Enhancers	Adipose Nuclei	Adipose
16	chr15:92461000-92468000	Enhancers	Left Ventricle	heart
17	chr15:92461400-92466800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr15:92461400-92469400	Weak transcription	Osteobl	bone
19	chr15:92461600-92465400	Weak transcription	Spleen	Spleen
20	chr15:92461600-92468800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:92462000-92465600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:92462000-92469600	Enhancers	Brain Substantia Nigra	brain
23	chr15:92462600-92466000	Weak transcription	Psoas Muscle	Psoas
24	chr15:92462800-92466000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr15:92462800-92469200	Weak transcription	Aorta	Aorta
26	chr15:92462800-92474400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:92462800-92482600	Weak transcription	HMEC	breast
28	chr15:92463000-92471200	Enhancers	Brain Hippocampus Middle	brain
29	chr15:92463400-92465400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:92463400-92465600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:92463400-92465800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr15:92463400-92466000	Enhancers	Fetal Heart	heart
33	chr15:92463600-92465400	Enhancers	Primary T cells fromperipheralblood	blood
34	chr15:92463800-92465400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr15:92463800-92465400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:92463800-92465600	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr15:92463800-92466400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr15:92463800-92482400	Weak transcription	Esophagus	oesophagus
39	chr15:92464000-92465600	Enhancers	Primary B cells from peripheral blood	blood
40	chr15:92464000-92465600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:92464000-92465800	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr15:92464000-92466800	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr15:92464200-92465600	Enhancers	Primary T cells from cord blood	blood
44	chr15:92464200-92468000	Enhancers	Lung	lung
45	chr15:92464400-92465400	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr15:92464400-92465400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:92464400-92465400	Weak transcription	Brain Anterior Caudate	brain
48	chr15:92464400-92465600	Enhancers	Primary B cells from cord blood	blood
49	chr15:92464400-92467600	Enhancers	Fetal Muscle Leg	muscle
50	chr15:92464600-92465400	Weak transcription	Rectal Mucosa Donor 31	rectum

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