Variant report

Variant	rs6500338
Chromosome Location	chr16:48190385-48190386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8046826	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6500338	LONP2	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48186600-48190800	Enhancers	Fetal Brain Male	brain
2	chr16:48189000-48190400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr16:48189000-48190800	Enhancers	Left Ventricle	heart
4	chr16:48189600-48190400	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr16:48189600-48191000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr16:48189600-48191000	Enhancers	Lung	lung
7	chr16:48189600-48193200	Enhancers	A549	lung
8	chr16:48189800-48190400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr16:48189800-48190800	Enhancers	Fetal Brain Female	brain
10	chr16:48189800-48190800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr16:48190000-48190800	Enhancers	Right Atrium	heart
12	chr16:48190200-48190600	Enhancers	Adipose Nuclei	Adipose
13	chr16:48190200-48190800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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