Variant report

Variant	rs6500390
Chromosome Location	chr16:48542849-48542850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1001872	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11076569	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11643514	0.81[EUR][1000 genomes]
rs11648225	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1948713	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2062553	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2062554	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2062555	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4785521	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55745119	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7189631	0.83[EUR][1000 genomes]
rs7202422	0.80[AMR][1000 genomes]
rs7202699	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7206781	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8046716	0.88[ASN][1000 genomes]
rs8052026	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8054389	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8056201	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8056346	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8057027	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8063059	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9921402	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9923092	0.80[EUR][1000 genomes]
rs9925108	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9925138	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9933892	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9937129	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9939368	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9940599	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv1800739	chr16:48418505-48560315	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv428658	chr16:48438656-48587750	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1065358	chr16:48513824-48554254	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1064323	chr16:48531171-48573066	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1060196	chr16:48531171-48578101	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48541800-48543000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:48542800-48544200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr16:48542800-48544400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr16:48542800-48544800	Weak transcription	Fetal Stomach	stomach

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