Variant report

Variant	rs6501328
Chromosome Location	chr17:67462981-67462982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs11544715	1.00[JPT][hapmap]
rs1345462	1.00[JPT][hapmap]
rs16973904	1.00[JPT][hapmap]
rs17686569	1.00[JPT][hapmap]
rs17690015	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs17759819	1.00[JPT][hapmap]
rs1992741	1.00[JPT][hapmap]
rs477045	1.00[JPT][hapmap]
rs536009	1.00[JPT][hapmap]
rs9302900	1.00[JPT][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs6501328	TPM2	trans	lymphoblastoid	seeQTL

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
2	chr17:67441400-67474600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr17:67445200-67463200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr17:67447800-67467600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr17:67448000-67473400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr17:67448200-67464200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr17:67448400-67473600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr17:67450200-67512600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr17:67457800-67476000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr17:67458000-67463000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr17:67458000-67470400	Weak transcription	Fetal Stomach	stomach
12	chr17:67458400-67463000	Weak transcription	NHDF-Ad	bronchial
13	chr17:67458400-67463200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr17:67458600-67463400	Weak transcription	Brain Hippocampus Middle	brain
15	chr17:67458600-67464600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr17:67458600-67469000	Weak transcription	Fetal Muscle Leg	muscle
17	chr17:67458600-67481000	Weak transcription	Right Ventricle	heart
18	chr17:67458800-67482600	Weak transcription	Brain Anterior Caudate	brain
19	chr17:67459000-67463400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr17:67459000-67463400	Weak transcription	Brain Substantia Nigra	brain
21	chr17:67459000-67470200	Weak transcription	Psoas Muscle	Psoas
22	chr17:67459200-67464200	Weak transcription	Primary T cells from cord blood	blood
23	chr17:67459200-67479000	Weak transcription	Right Atrium	heart
24	chr17:67461200-67464800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr17:67461400-67467600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr17:67461600-67464000	Enhancers	Placenta	Placenta
27	chr17:67461800-67463800	Enhancers	H1 Cell Line	embryonic stem cell
28	chr17:67461800-67463800	Enhancers	Duodenum Mucosa	Duodenum
29	chr17:67462200-67463000	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr17:67462200-67464200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr17:67462200-67464600	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr17:67462400-67463200	Enhancers	Fetal Intestine Small	intestine
33	chr17:67462400-67463400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr17:67462400-67463800	Enhancers	H9 Cell Line	embryonic stem cell
35	chr17:67462400-67463800	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr17:67462400-67464400	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr17:67462400-67464800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr17:67462400-67464800	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr17:67462400-67470200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr17:67462600-67463000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:67462600-67463000	Enhancers	Esophagus	oesophagus
42	chr17:67462600-67463200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr17:67462600-67463600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr17:67462600-67463800	Enhancers	Stomach Mucosa	stomach
45	chr17:67462600-67463800	Flanking Active TSS	A549	lung
46	chr17:67462600-67464000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr17:67462600-67464000	Enhancers	HMEC	breast
48	chr17:67462600-67464600	Enhancers	HUVEC	blood vessel
49	chr17:67462600-67465000	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr17:67462600-67465200	Enhancers	HUES6 Cell Line	embryonic stem cell

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