Variant report

Variant	rs6501814
Chromosome Location	chr17:66846803-66846804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11655936	0.81[ASN][1000 genomes]
rs1443262	0.81[EUR][1000 genomes]
rs1481	0.81[CEU][hapmap]
rs1838101	0.80[EUR][1000 genomes]
rs34723012	0.94[ASN][1000 genomes]
rs35443444	0.82[ASN][1000 genomes]
rs59280712	0.81[ASN][1000 genomes]
rs6501813	0.81[EUR][1000 genomes]
rs66606110	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66845400-66847000	Enhancers	Ovary	ovary
2	chr17:66845600-66850600	Enhancers	Fetal Muscle Leg	muscle
3	chr17:66845800-66847000	Enhancers	NHDF-Ad	bronchial
4	chr17:66845800-66847200	Enhancers	Adipose Nuclei	Adipose
5	chr17:66846000-66847000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr17:66846000-66848000	Enhancers	Fetal Lung	lung
7	chr17:66846200-66847200	Enhancers	Fetal Stomach	stomach
8	chr17:66846200-66851200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr17:66846400-66849400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr17:66846800-66847200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr17:66846800-66847200	Enhancers	Rectal Smooth Muscle	rectum
12	chr17:66846800-66847400	Enhancers	Colon Smooth Muscle	Colon
13	chr17:66846800-66849000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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