Variant report

Variant	rs6502441
Chromosome Location	chr17:15178880-15178881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15177773..15180242-chr17:15236243..15238817,2	MCF-7	breast:
2	chr17:15176128..15178880-chr17:15180153..15182408,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1079974	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1079975	0.83[EUR][1000 genomes]
rs1121593	0.82[EUR][1000 genomes]
rs12449862	0.81[EUR][1000 genomes]
rs1380179	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1380181	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16951285	0.80[EUR][1000 genomes]
rs1870428	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2323652	0.82[EUR][1000 genomes]
rs2323653	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4791620	0.83[EUR][1000 genomes]
rs7217780	0.88[EUR][1000 genomes]
rs7502492	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8070951	0.81[EUR][1000 genomes]
rs8073642	0.82[EUR][1000 genomes]
rs981250	0.94[EUR][1000 genomes]
rs9944503	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6502441	RHOBTB3	trans	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15173200-15192600	Weak transcription	Left Ventricle	heart
2	chr17:15174800-15181600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:15177200-15179200	Weak transcription	Right Ventricle	heart
4	chr17:15177200-15179600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr17:15177200-15180800	Weak transcription	Hela-S3	cervix
6	chr17:15177200-15181400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr17:15177200-15181600	Weak transcription	Adipose Nuclei	Adipose
8	chr17:15177200-15181600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr17:15177200-15181800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr17:15177400-15179200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:15177400-15179400	Weak transcription	Osteobl	bone
12	chr17:15177400-15179600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr17:15177400-15179600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr17:15177400-15179600	Weak transcription	NHDF-Ad	bronchial
15	chr17:15177400-15179600	Weak transcription	NHLF	lung
16	chr17:15177400-15181600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr17:15177400-15181600	Weak transcription	NH-A	brain
18	chr17:15177800-15179200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr17:15177800-15179600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr17:15178000-15181800	Weak transcription	HSMMtube	muscle

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