Variant report

Variant	rs6502646
Chromosome Location	chr17:18224846-18224847
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:134)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:134 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr17:18224740-18224890	HMEC	breast:	n/a	n/a
2	CTCF	chr17:18224653-18224948	A549	lung:	n/a	n/a
3	CTCF	chr17:18224782-18224987	IMR90	lung:	n/a	n/a
4	POLR2A	chr17:18224657-18224966	HepG2	liver:	n/a	n/a
5	SMC3	chr17:18224693-18225018	Hela-S3	cervix:	n/a	n/a
6	RAD21	chr17:18224502-18225003	HCT-116	colon:	n/a	n/a
7	CTCF	chr17:18224727-18224911	GM19239	blood:	n/a	n/a
8	CTCF	chr17:18224746-18224924	Hela-S3	cervix:	n/a	n/a
9	CTCF	chr17:18224820-18224970	SK-N-SH_RA	brain:	n/a	n/a
10	POLR2A	chr17:18224380-18225190	PFSK-1	brain:	n/a	n/a
11	CTCF	chr17:18224636-18225032	K562	blood:	n/a	n/a
12	CTCF	chr17:18224603-18224994	K562	blood:	n/a	n/a
13	CTCF	chr17:18224720-18224870	HPAF	blood vessel:	n/a	n/a
14	CTCF	chr17:18224740-18224890	SAEC	small airway:	n/a	n/a
15	CTCF	chr17:18224596-18225029	K562	blood:	n/a	n/a
16	POLR2A	chr17:18224719-18224880	Hela-S3	cervix:	n/a	n/a
17	CTCF	chr17:18224760-18224910	AG10803	skin:	n/a	n/a
18	CTCF	chr17:18224720-18224870	WERI-Rb-1	eye:	n/a	n/a
19	CTCF	chr17:18224760-18224910	NB4	blood:	n/a	n/a
20	POLR2A	chr17:18223854-18224854	HepG2	liver:	n/a	n/a
21	MYC	chr17:18224807-18224884	K562	blood:	n/a	n/a
22	POLR2A	chr17:18224430-18224922	GM12891	blood:	n/a	n/a
23	CTCF	chr17:18224780-18224863	A549	lung:	n/a	n/a
24	CTCF	chr17:18224760-18224910	HMF	breast:	n/a	n/a
25	CTCF	chr17:18224746-18224917	MCF-7	breast:	n/a	n/a
26	POLR2A	chr17:18224551-18225058	GM12878	blood:	n/a	n/a
27	CTCF	chr17:18224700-18224850	AG04449	skin:	n/a	n/a
28	CTCF	chr17:18224760-18224910	HCM	heart:	n/a	n/a
29	CTCF	chr17:18224720-18224870	HAc	cerebellar:	n/a	n/a
30	CTCF	chr17:18224760-18224910	HA-sp	spinal cord:	n/a	n/a
31	CTCF	chr17:18224740-18224890	GM12878	blood:	n/a	n/a
32	CTCF	chr17:18224720-18224870	HCPEpiC	choroid plexus:	n/a	n/a
33	CTCF	chr17:18224700-18224850	HRPEpiC	eye:	n/a	n/a
34	CTCF	chr17:18224740-18224890	HPF	lung:	n/a	n/a
35	CTCF	chr17:18224801-18224933	ProgFib	skin:	n/a	n/a
36	CTCF	chr17:18224740-18224890	HRE	kidney:	n/a	n/a
37	CTCF	chr17:18224820-18224970	Hela-S3	cervix:	n/a	n/a
38	ZNF143	chr17:18224679-18224992	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr17:18224740-18224890	GM12866	blood:	n/a	n/a
40	CTCF	chr17:18224740-18224890	AG10803	skin:	n/a	n/a
41	CTCF	chr17:18224720-18224870	GM12870	blood:	n/a	n/a
42	CTCF	chr17:18224720-18224870	A549	lung:	n/a	n/a
43	CTCF	chr17:18224778-18224902	Gliobla	brain:	n/a	n/a
44	CTCF	chr17:18224755-18224870	MCF-7	breast:	n/a	n/a
45	CTCF	chr17:18224740-18224890	NHDF-neo	bronchial:	n/a	n/a
46	CTCF	chr17:18224720-18224870	Hela-S3	cervix:	n/a	n/a
47	CTCF	chr17:18224629-18224940	T-47D	breast:	n/a	n/a
48	CTCF	chr17:18224700-18224850	GM06990	blood:	n/a	n/a
49	CTCF	chr17:18224630-18224997	H1-hESC	embryonic stem cell:	n/a	n/a
50	RAD21	chr17:18224617-18224991	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:18224131..18225984-chr17:18227061..18229677,2	K562	blood:
2	chr17:18224827..18226997-chr17:18265358..18268214,2	MCF-7	breast:
3	chr17:18223830..18226136-chr17:18229956..18231632,3	MCF-7	breast:
4	chr17:18222298..18225183-chr17:18254419..18256749,2	MCF-7	breast:
5	chr17:18217609..18225680-chr17:18226125..18232187,14	K562	blood:
6	chr17:18151307..18151973-chr17:18224321..18225020,2	MCF-7	breast:
7	chr17:18160479..18164858-chr17:18221003..18224877,4	MCF-7	breast:
8	chr17:18163811..18165499-chr17:18223440..18225988,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000267350	TF binding region
ENSG00000267350	Chromatin interaction
ENSG00000177427	Chromatin interaction
ENSG00000176974	Chromatin interaction
ENSG00000177731	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs11868259	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11870126	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12936652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12936769	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12937300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12939092	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12939259	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12939357	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12939757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12945597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12946058	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12949078	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12949983	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12952556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12952667	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1563631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563633	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1979276	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1979277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2230154	1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2273028	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2273030	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2386456	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2386457	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2386458	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2461837	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2461838	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2605137	0.83[YRI][hapmap]
rs2605142	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2746023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2746024	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2746025	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs2746027	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs28419113	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3764405	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794771	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3794772	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3829583	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4632181	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4924750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4924842	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4924843	0.90[EUR][1000 genomes]
rs4924845	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4924847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4924849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4925160	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4925162	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4925163	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4925167	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4925169	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4925171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4925172	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58215032	0.91[EUR][1000 genomes]
rs643333	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6502643	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6502644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6502649	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66903818	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs672356	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7207123	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7207306	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7215839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7222684	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7223122	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72561771	0.85[AFR][1000 genomes]
rs8068602	0.83[EUR][1000 genomes]
rs8068854	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8070633	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8071231	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8073464	0.86[EUR][1000 genomes]
rs8074444	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8080966	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs921865	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs921866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs921986	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs941451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9898631	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1061162	chr17:17978838-18259234	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv492305	chr17:17980441-18424702	Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
5	nsv833386	chr17:18170261-18332726	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv1057081	chr17:18171516-18256347	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv543247	chr17:18171516-18256347	Weak transcription Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1062368	chr17:18180747-18259234	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv833387	chr17:18200081-18378155	Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	esv1806346	chr17:18200081-18446384	Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
11	esv1812661	chr17:18200081-18446384	Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv428333	chr17:18200081-18446384	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
13	nsv427992	chr17:18200081-19192047	Strong transcription Genic enhancers Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
14	nsv521075	chr17:18220770-18227081	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs6502646	SHMT1	Cis_1M	lymphoblastoid	RTeQTL
rs6502646	SHMT1	cis	Muscle Skeletal	GTEx
rs6502646	SHMT1	cis	multi-tissue	Pritchard
rs6502646	ALKBH5	cis	Esophagus Muscularis	GTEx
rs6502646	RP11-258F1.1	cis	Esophagus Muscularis	GTEx
rs6502646	LGALS9C	cis	Whole Blood	GTEx
rs6502646	LLGL1	cis	Esophagus Mucosa	GTEx
rs6502646	SHMT1	cis	Esophagus Muscularis	GTEx
rs6502646	SHMT1	cis	Artery Tibial	GTEx
rs6502646	SHMT1	cis	Nerve Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:18219400-18227200	Genic enhancers	Primary T cells fromperipheralblood	blood
2	chr17:18219400-18266000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:18219600-18225000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr17:18219600-18226000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:18219800-18225000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
6	chr17:18219800-18226000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr17:18220000-18226000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr17:18220200-18228000	Weak transcription	Fetal Kidney	kidney
9	chr17:18220400-18228000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr17:18221400-18226000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr17:18221600-18225800	Weak transcription	Aorta	Aorta
12	chr17:18221600-18225800	Weak transcription	HSMMtube	muscle
13	chr17:18221600-18226200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr17:18221600-18226200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr17:18221800-18225800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr17:18221800-18226000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr17:18222200-18225800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr17:18222200-18226000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr17:18222400-18225600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr17:18222400-18227200	Weak transcription	HUVEC	blood vessel
21	chr17:18222400-18266200	Weak transcription	Small Intestine	intestine
22	chr17:18222600-18225200	Genic enhancers	HepG2	liver
23	chr17:18222600-18226000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr17:18222600-18227200	Weak transcription	Psoas Muscle	Psoas
25	chr17:18222600-18240800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr17:18222600-18243200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr17:18222800-18226200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr17:18222800-18236800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr17:18223000-18225600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr17:18223000-18225800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr17:18223000-18226000	Weak transcription	Brain Substantia Nigra	brain
32	chr17:18223000-18226200	Weak transcription	Hela-S3	cervix
33	chr17:18223000-18228200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr17:18223400-18228400	Strong transcription	Primary B cells from cord blood	blood
35	chr17:18223400-18235400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr17:18223600-18226000	Weak transcription	Fetal Lung	lung
37	chr17:18223600-18240800	Strong transcription	Fetal Muscle Leg	muscle
38	chr17:18223600-18265400	Strong transcription	Fetal Stomach	stomach
39	chr17:18223800-18225800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr17:18223800-18225800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr17:18223800-18226000	Weak transcription	Stomach Mucosa	stomach
42	chr17:18223800-18226200	Weak transcription	Osteobl	bone
43	chr17:18223800-18226800	Weak transcription	NHDF-Ad	bronchial
44	chr17:18223800-18227400	Weak transcription	NH-A	brain
45	chr17:18223800-18229200	Strong transcription	NHEK	skin
46	chr17:18223800-18236800	Strong transcription	Primary T cells from cord blood	blood
47	chr17:18223800-18236800	Strong transcription	Lung	lung
48	chr17:18223800-18240800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr17:18223800-18253600	Strong transcription	Thymus	Thymus
50	chr17:18224000-18226000	Weak transcription	HMEC	breast

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