Variant report

Variant	rs6504056
Chromosome Location	chr17:59652444-59652445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:69)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:69 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr17:59651993..59652850-chr20:49406786..49407840,7	MCF-7	breast:
2	chr17:59628307..59629309-chr17:59651838..59652851,13	MCF-7	breast:
3	chr10:19399936..19400956-chr17:59651934..59652869,4	MCF-7	breast:
4	chr17:59649847..59655729-chr20:49404839..49413187,14	MCF-7	breast:
5	chr17:58220402..58221099-chr17:59652302..59652870,2	MCF-7	breast:
6	chr17:59651738..59653065-chr20:49410816..49412282,8	MCF-7	breast:
7	chr17:59489184..59491261-chr17:59650345..59653673,119	MCF-7	breast:
8	chr12:58138532..58140370-chr17:59650854..59652937,2	MCF-7	breast:
9	chr17:59651616..59652970-chr6:129118414..129119434,6	MCF-7	breast:
10	chr17:59627647..59629222-chr17:59651780..59653063,28	MCF-7	breast:
11	chr17:59489238..59492668-chr17:59650942..59653805,58	MCF-7	breast:
12	chr17:59502510..59504407-chr17:59651814..59654182,19	MCF-7	breast:
13	chr17:59652019..59652612-chr8:122328178..122329036,2	MCF-7	breast:
14	chr17:59489834..59490453-chr17:59652319..59652838,2	MCF-7	breast:
15	chr10:65800662..65801535-chr17:59652020..59652903,2	MCF-7	breast:
16	chr17:59570678..59571310-chr17:59652032..59652571,2	MCF-7	breast:
17	chr17:59476567..59477140-chr17:59651919..59652514,2	MCF-7	breast:
18	chr17:59652123..59652710-chr20:52196771..52197427,2	MCF-7	breast:
19	chr17:59651236..59652992-chr20:49285787..49288321,2	MCF-7	breast:
20	chr17:59652015..59652689-chr20:49411328..49411845,2	MCF-7	breast:
21	chr17:59611865..59612805-chr17:59651938..59652656,2	MCF-7	breast:
22	chr17:59652095..59652729-chr20:52194429..52195226,2	MCF-7	breast:
23	chr17:59652154..59652890-chr20:52480568..52481434,2	MCF-7	breast:
24	chr17:59504589..59505192-chr17:59651894..59652795,2	MCF-7	breast:
25	chr17:59628277..59629198-chr17:59652002..59652621,2	MCF-7	breast:
26	chr17:59651419..59653338-chr2:140196410..140197431,15	MCF-7	breast:
27	chr17:59493093..59495453-chr17:59650549..59653616,140	MCF-7	breast:
28	chr10:19399956..19400936-chr17:59652354..59652900,2	MCF-7	breast:
29	chr17:59652235..59653151-chr17:64018392..64018930,2	MCF-7	breast:
30	chr17:59652054..59652832-chr2:140196410..140197411,7	MCF-7	breast:
31	chr1:107695419..107696320-chr17:59651964..59652646,4	MCF-7	breast:
32	chr17:59629285..59630173-chr17:59651966..59652945,2	MCF-7	breast:
33	chr17:59470759..59471614-chr17:59651499..59652709,3	MCF-7	breast:
34	chr17:59651938..59652850-chr17:59913917..59915255,6	MCF-7	breast:
35	chr17:57081989..57082706-chr17:59651880..59652574,2	MCF-7	breast:
36	chr17:59487737..59488821-chr17:59651765..59652893,4	MCF-7	breast:
37	chr17:59078388..59078982-chr17:59652013..59652898,2	MCF-7	breast:
38	chr17:59652395..59652915-chr17:59764616..59765165,2	MCF-7	breast:
39	chr1:85831268..85831788-chr17:59651760..59652834,3	MCF-7	breast:
40	chr1:85830768..85831788-chr17:59651865..59653642,10	MCF-7	breast:
41	chr17:59651969..59652895-chr20:53297083..53297793,2	MCF-7	breast:
42	chr17:59486532..59487507-chr17:59651731..59653022,4	MCF-7	breast:
43	chr17:59651944..59652826-chr6:106843888..106844454,2	MCF-7	breast:
44	chr17:59631722..59632374-chr17:59651789..59652541,2	MCF-7	breast:
45	chr17:59487595..59488942-chr17:59651907..59652898,5	MCF-7	breast:
46	chr17:59495657..59496476-chr17:59652000..59652709,3	MCF-7	breast:
47	chr17:59470898..59471590-chr17:59652014..59652855,3	MCF-7	breast:
48	chr17:59493872..59494826-chr17:59652030..59652868,2	MCF-7	breast:
49	chr17:59652336..59652988-chr17:59915445..59916067,2	MCF-7	breast:
50	chr17:59652322..59652880-chr20:49406844..49407572,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000135452	Chromatin interaction
ENSG00000124243	Chromatin interaction
ENSG00000121075	Chromatin interaction
ENSG00000186364	Chromatin interaction
ENSG00000267137	Chromatin interaction
ENSG00000267280	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10445326	0.86[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2040610	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2040611	0.89[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2040612	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4968442	0.86[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4968575	0.85[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56992242	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6504055	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504057	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7210430	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7212263	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7212340	1.00[YRI][hapmap]
rs7212748	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7219527	0.85[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7223540	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7224184	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs725900	0.86[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs728368	0.81[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8064798	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8071005	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8076873	0.86[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9899863	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59651400-59653000	Enhancers	Fetal Lung	lung
2	chr17:59652000-59652800	Enhancers	Hela-S3	cervix
3	chr17:59652000-59653000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr17:59652200-59652600	Enhancers	Pancreas	Pancrea
5	chr17:59652200-59652800	Flanking Active TSS	A549	lung
6	chr17:59652200-59653000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr17:59652200-59653200	Enhancers	HepG2	liver
8	chr17:59652400-59652800	Flanking Active TSS	NHLF	lung
9	chr17:59652400-59652800	Flanking Active TSS	Osteobl	bone
10	chr17:59652400-59653600	Enhancers	Muscle Satellite Cultured Cells	--

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