Variant report

Variant	rs650411
Chromosome Location	chr11:102351865-102351866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2019777	0.96[EUR][1000 genomes]
rs2156530	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs480846	0.93[EUR][1000 genomes]
rs490860	0.98[EUR][1000 genomes]
rs518851	0.98[EUR][1000 genomes]
rs530227	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs539751	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs548841	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs548974	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs557747	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs558679	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs589271	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs602271	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs621010	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs651853	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs652329	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs666042	0.84[EUR][1000 genomes]
rs683933	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv898334	chr11:102272884-102353192	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv469990	chr11:102335609-102413943	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv556150	chr11:102335609-102415859	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv468854	chr11:102336617-102413943	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv556151	chr11:102336617-102413943	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102341000-102359600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:102347000-102353000	Enhancers	Stomach Mucosa	stomach
3	chr11:102347800-102353000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:102348000-102353400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:102348800-102352000	Weak transcription	K562	blood
6	chr11:102348800-102353400	Weak transcription	Hela-S3	cervix
7	chr11:102350200-102353400	Weak transcription	HepG2	liver
8	chr11:102351600-102352600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:102351800-102352400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:102351800-102352400	Enhancers	Brain Germinal Matrix	brain
11	chr11:102351800-102352600	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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