Variant report

Variant	rs6505815
Chromosome Location	chr18:13474798-13474799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13473327..13475266-chr18:13543358..13546215,2	MCF-7	breast:
2	chr18:13474438..13476650-chr18:13495412..13497613,2	MCF-7	breast:
3	chr18:13474445..13476627-chr18:13483907..13485850,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10502421	0.83[EUR][1000 genomes]
rs12956044	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1785114	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58402797	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8099129	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv909411	chr18:13425604-13493554	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13453000-13494800	Weak transcription	Aorta	Aorta
2	chr18:13456600-13497800	Weak transcription	Gastric	stomach
3	chr18:13466000-13491400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr18:13466200-13476400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr18:13467000-13501000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr18:13467200-13475600	Weak transcription	Small Intestine	intestine
7	chr18:13467400-13502200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr18:13470600-13475000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr18:13470600-13475200	Enhancers	Fetal Brain Male	brain
10	chr18:13470800-13482000	Weak transcription	Colonic Mucosa	Colon
11	chr18:13470800-13501800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr18:13471000-13500400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr18:13471000-13537400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr18:13471400-13482400	Strong transcription	Dnd41	blood
15	chr18:13471800-13479000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr18:13472000-13479000	Strong transcription	Primary B cells from cord blood	blood
17	chr18:13472400-13475200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr18:13472600-13474800	Strong transcription	Primary B cells from peripheral blood	blood
19	chr18:13472600-13475400	Enhancers	Brain Anterior Caudate	brain
20	chr18:13472600-13477200	Weak transcription	Fetal Muscle Leg	muscle
21	chr18:13472600-13477200	Weak transcription	Left Ventricle	heart
22	chr18:13472600-13477800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr18:13472600-13478200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr18:13472600-13479000	Strong transcription	Thymus	Thymus
25	chr18:13472600-13479000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr18:13472600-13479800	Weak transcription	Pancreas	Pancrea
27	chr18:13472600-13480600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr18:13472600-13481600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr18:13472600-13486400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr18:13472600-13497800	Weak transcription	Adipose Nuclei	Adipose
31	chr18:13472600-13497800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr18:13472600-13497800	Weak transcription	Lung	lung
33	chr18:13472800-13475000	Enhancers	Brain Substantia Nigra	brain
34	chr18:13472800-13491600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr18:13472800-13497600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr18:13473000-13481400	Strong transcription	Primary T cells from cord blood	blood
37	chr18:13473000-13485400	Weak transcription	Liver	Liver
38	chr18:13473200-13475200	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr18:13473200-13476200	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr18:13473200-13498200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr18:13473400-13474800	Weak transcription	Brain Hippocampus Middle	brain
42	chr18:13473400-13475000	Weak transcription	Fetal Heart	heart
43	chr18:13473400-13477400	Weak transcription	Fetal Brain Female	brain
44	chr18:13473800-13475000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr18:13473800-13475000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr18:13473800-13475200	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr18:13473800-13475200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr18:13473800-13475600	Enhancers	Right Ventricle	heart
49	chr18:13474000-13474800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr18:13474000-13474800	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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