Variant report

Variant	rs6505823
Chromosome Location	chr18:13528633-13528634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13522577..13524181-chr18:13527105..13529225,2	MCF-7	breast:
2	chr18:13527545..13530214-chr18:13534256..13537841,3	MCF-7	breast:
3	chr18:13526577..13529463-chr18:13539348..13541829,2	MCF-7	breast:
4	chr18:13215680..13221098-chr18:13528532..13533498,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267239	Chromatin interaction
ENSG00000168675	Chromatin interaction
ENSG00000267136	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11663264	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11665065	1.00[ASW][hapmap];0.91[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.83[LWK][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1557306	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8095531	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8099189	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13471000-13537400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr18:13499600-13539200	Weak transcription	Gastric	stomach
3	chr18:13499800-13531000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr18:13501800-13530600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr18:13505000-13536000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr18:13507000-13536400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr18:13511600-13530400	Weak transcription	Colon Smooth Muscle	Colon
8	chr18:13513200-13538200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr18:13517000-13532400	Weak transcription	HepG2	liver
10	chr18:13517600-13532800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr18:13517600-13539000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr18:13517600-13539200	Weak transcription	Aorta	Aorta
13	chr18:13517800-13530200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr18:13519000-13529200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr18:13519000-13530200	Weak transcription	Fetal Lung	lung
16	chr18:13520400-13529200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr18:13520600-13530400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr18:13521200-13530200	Weak transcription	Adipose Nuclei	Adipose
19	chr18:13521400-13530400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr18:13521600-13539200	Weak transcription	Colonic Mucosa	Colon
21	chr18:13522000-13530000	Weak transcription	Fetal Muscle Leg	muscle
22	chr18:13522200-13535000	Strong transcription	Dnd41	blood
23	chr18:13522600-13529600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr18:13524000-13536400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr18:13524000-13548400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr18:13524400-13530400	Strong transcription	Primary T cells from cord blood	blood
27	chr18:13524800-13530800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr18:13524800-13533000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr18:13524800-13534000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr18:13525200-13529400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr18:13525400-13530200	Weak transcription	Fetal Heart	heart
32	chr18:13525600-13528800	Strong transcription	Thymus	Thymus
33	chr18:13525600-13529600	Weak transcription	Right Ventricle	heart
34	chr18:13525600-13530200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr18:13525800-13530000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr18:13525800-13530400	Strong transcription	Fetal Thymus	thymus
37	chr18:13525800-13530600	Weak transcription	Psoas Muscle	Psoas
38	chr18:13525800-13530600	Weak transcription	Right Atrium	heart
39	chr18:13525800-13540400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr18:13525800-13547400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr18:13527000-13529000	Strong transcription	Fetal Stomach	stomach
42	chr18:13527000-13530400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr18:13527000-13538800	Weak transcription	Fetal Brain Female	brain
44	chr18:13527200-13530200	Weak transcription	Brain Substantia Nigra	brain
45	chr18:13527400-13530000	Weak transcription	Brain Hippocampus Middle	brain
46	chr18:13527400-13530200	Weak transcription	Brain Anterior Caudate	brain
47	chr18:13527400-13530400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr18:13527400-13530600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr18:13527400-13538800	Weak transcription	Brain Germinal Matrix	brain
50	chr18:13527600-13530400	Weak transcription	Spleen	Spleen

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