Variant report

Variant	rs6506547
Chromosome Location	chr18:8104296-8104297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7236194	0.84[AFR][1000 genomes]
rs8082936	0.84[AFR][1000 genomes]
rs8083862	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8052600-8105200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr18:8067400-8110200	Weak transcription	Right Ventricle	heart
3	chr18:8068600-8124800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr18:8084600-8108000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr18:8088800-8113400	Weak transcription	A549	lung
6	chr18:8092800-8122200	Weak transcription	Thymus	Thymus
7	chr18:8093400-8104800	Weak transcription	Ovary	ovary
8	chr18:8096600-8125000	Weak transcription	Pancreas	Pancrea
9	chr18:8100400-8106800	Weak transcription	Lung	lung
10	chr18:8102800-8126600	Weak transcription	Psoas Muscle	Psoas
11	chr18:8103000-8110400	Weak transcription	Left Ventricle	heart
12	chr18:8103400-8107000	Weak transcription	Fetal Thymus	thymus
13	chr18:8103400-8107200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr18:8103400-8108600	Weak transcription	Fetal Kidney	kidney
15	chr18:8103400-8116400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr18:8103400-8116600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr18:8103400-8123800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr18:8103600-8107200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr18:8103600-8110000	Weak transcription	Adipose Nuclei	Adipose
20	chr18:8103600-8110000	Weak transcription	Fetal Heart	heart
21	chr18:8103600-8116000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr18:8103600-8116400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr18:8103600-8117800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr18:8103600-8122200	Weak transcription	Aorta	Aorta
25	chr18:8103600-8124800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr18:8103600-8136600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr18:8103600-8139200	Weak transcription	Brain Anterior Caudate	brain
28	chr18:8103800-8116200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr18:8104000-8106000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr18:8104200-8132600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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