Variant report

Variant	rs6506552
Chromosome Location	chr18:8179658-8179659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12955911	0.96[ASN][1000 genomes]
rs2192193	0.97[ASN][1000 genomes]
rs2302502	0.96[ASN][1000 genomes]
rs4459615	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4476239	0.85[ASN][1000 genomes]
rs7232503	0.96[ASN][1000 genomes]
rs7233007	0.95[ASN][1000 genomes]
rs7233080	0.96[ASN][1000 genomes]
rs7233548	0.95[ASN][1000 genomes]
rs8099632	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv458018	chr18:8110805-8645907	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv576426	chr18:8110805-8645907	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv458020	chr18:8161470-8183260	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv576427	chr18:8161470-8183260	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv909360	chr18:8167050-8207445	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8170800-8225400	Weak transcription	Aorta	Aorta
2	chr18:8175000-8195000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:8177000-8180600	Weak transcription	NHDF-Ad	bronchial
4	chr18:8177400-8180600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr18:8177600-8182800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr18:8177600-8187600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr18:8177800-8192800	Weak transcription	Fetal Heart	heart
8	chr18:8178000-8185400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:8178000-8186600	Weak transcription	Left Ventricle	heart
10	chr18:8178000-8186600	Weak transcription	Pancreas	Pancrea
11	chr18:8178000-8190800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr18:8178000-8191200	Weak transcription	Gastric	stomach
13	chr18:8178000-8192400	Weak transcription	A549	lung
14	chr18:8178000-8193600	Weak transcription	Ovary	ovary
15	chr18:8178000-8198400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr18:8178000-8204800	Weak transcription	Right Ventricle	heart
17	chr18:8178000-8230000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr18:8178200-8186600	Weak transcription	Colon Smooth Muscle	Colon
19	chr18:8178200-8191000	Weak transcription	Psoas Muscle	Psoas
20	chr18:8178200-8200200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr18:8178200-8212400	Weak transcription	Adipose Nuclei	Adipose
22	chr18:8178200-8216400	Weak transcription	Spleen	Spleen
23	chr18:8178600-8181400	Weak transcription	Lung	lung
24	chr18:8178600-8186600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr18:8178600-8188200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr18:8179000-8181400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr18:8179000-8196200	Weak transcription	Primary T cells from cord blood	blood
28	chr18:8179200-8180000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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