Variant report

Variant	rs6506656
Chromosome Location	chr18:9367390-9367391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9366182..9367790-chr18:9474261..9475962,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000017797	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11081472	0.85[ASW][hapmap]
rs11081475	0.92[GIH][hapmap]
rs11875065	0.85[ASW][hapmap]
rs16954989	0.85[ASW][hapmap]
rs16954996	0.85[ASW][hapmap]
rs7229150	0.85[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1056407	chr18:9144345-9553764	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1062025	chr18:9287249-9552470	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv543643	chr18:9287249-9552470	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv909365	chr18:9299538-9400422	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6506656	TWSG1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9335400-9369400	Weak transcription	Pancreas	Pancrea
2	chr18:9335400-9371400	Weak transcription	Gastric	stomach
3	chr18:9335600-9372600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr18:9335800-9367600	Weak transcription	Fetal Thymus	thymus
5	chr18:9335800-9367600	Weak transcription	Lung	lung
6	chr18:9335800-9370200	Weak transcription	Adipose Nuclei	Adipose
7	chr18:9341000-9371800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr18:9341200-9367400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr18:9341200-9391400	Weak transcription	Liver	Liver
10	chr18:9341200-9403800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr18:9344000-9367400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr18:9344200-9367600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr18:9344200-9367800	Weak transcription	Primary B cells from cord blood	blood
14	chr18:9344400-9404200	Weak transcription	Primary T cells from cord blood	blood
15	chr18:9345200-9367400	Weak transcription	Fetal Brain Female	brain
16	chr18:9345600-9367400	Weak transcription	Placenta	Placenta
17	chr18:9345600-9377600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr18:9348600-9369600	Weak transcription	K562	blood
19	chr18:9348800-9367400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr18:9348800-9367600	Weak transcription	NHDF-Ad	bronchial
21	chr18:9349000-9367400	Weak transcription	Dnd41	blood
22	chr18:9354400-9380400	Weak transcription	NHLF	lung
23	chr18:9358800-9367400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr18:9359400-9369200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr18:9359600-9369200	Weak transcription	Spleen	Spleen
26	chr18:9360400-9403000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr18:9360600-9374000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr18:9361600-9369000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr18:9361800-9380200	Weak transcription	Small Intestine	intestine
30	chr18:9362000-9367400	Weak transcription	Fetal Lung	lung
31	chr18:9362000-9369600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr18:9362000-9380400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr18:9362200-9367400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr18:9362400-9380000	Weak transcription	Brain Germinal Matrix	brain
35	chr18:9362800-9369200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr18:9362800-9374400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr18:9363200-9367400	Weak transcription	Fetal Intestine Small	intestine
38	chr18:9363200-9369600	Weak transcription	A549	lung
39	chr18:9363200-9369800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr18:9363200-9380200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr18:9363400-9369400	Weak transcription	Fetal Heart	heart
42	chr18:9363600-9367400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr18:9364200-9370200	Strong transcription	Fetal Stomach	stomach
44	chr18:9364800-9369600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr18:9364800-9409400	Weak transcription	Aorta	Aorta
46	chr18:9365000-9367600	Weak transcription	Colonic Mucosa	Colon
47	chr18:9365200-9367400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr18:9365400-9368200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr18:9365800-9372200	Weak transcription	Right Ventricle	heart
50	chr18:9366200-9367400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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