Variant report

Variant	rs6507665
Chromosome Location	chr18:43719835-43719836
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:43677198..43679703-chr18:43717582..43720045,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152234	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11663162	0.88[EUR][1000 genomes]
rs11875115	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12605796	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12959827	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12970379	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1612622	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1618124	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1620584	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1620609	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1626506	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1632043	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1658904	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1658905	0.95[EUR][1000 genomes]
rs1658906	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1658907	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1658908	0.88[EUR][1000 genomes]
rs1791400	0.94[EUR][1000 genomes]
rs1791401	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1791406	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1791407	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1791408	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1791410	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1791411	0.84[ASN][1000 genomes]
rs1791412	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1791413	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1791414	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1791421	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2886001	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35029196	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35211836	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4274509	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4315430	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4316847	0.88[EUR][1000 genomes]
rs6507667	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6507675	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7228642	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7234588	0.87[EUR][1000 genomes]
rs7242845	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8089015	0.94[EUR][1000 genomes]
rs8090410	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9954565	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062024	chr18:43589516-43749410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv543694	chr18:43589516-43749410	Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43685200-43735600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:43685400-43729000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:43685400-43732200	Weak transcription	Fetal Kidney	kidney
4	chr18:43706200-43747800	Weak transcription	Brain Substantia Nigra	brain
5	chr18:43707600-43735800	Weak transcription	Primary B cells from cord blood	blood
6	chr18:43708600-43723400	Weak transcription	Fetal Lung	lung
7	chr18:43710000-43723600	Weak transcription	HSMM	muscle
8	chr18:43710000-43732000	Weak transcription	Right Ventricle	heart
9	chr18:43710200-43727800	Weak transcription	Fetal Intestine Large	intestine
10	chr18:43710200-43728800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr18:43710400-43722200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr18:43710400-43722800	Weak transcription	Aorta	Aorta
13	chr18:43710400-43732400	Weak transcription	Lung	lung
14	chr18:43710400-43733000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr18:43710600-43752800	Weak transcription	Fetal Brain Female	brain
16	chr18:43710800-43732000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr18:43711000-43728600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr18:43711000-43735600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr18:43711200-43732000	Weak transcription	Fetal Muscle Leg	muscle
20	chr18:43712200-43720200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr18:43712200-43721400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr18:43712200-43732000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr18:43712400-43721200	Weak transcription	Fetal Stomach	stomach
24	chr18:43712400-43723200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr18:43712400-43739200	Weak transcription	Fetal Intestine Small	intestine
26	chr18:43714000-43725400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr18:43714000-43728600	Weak transcription	Primary T cells from cord blood	blood
28	chr18:43714000-43748400	Weak transcription	Ovary	ovary
29	chr18:43715200-43723400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr18:43715600-43725600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr18:43715600-43732000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr18:43715600-43733400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr18:43715800-43728800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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