Variant report

Variant	rs6507818
Chromosome Location	chr18:45658513-45658514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45650799..45652608-chr18:45657316..45660495,3	MCF-7	breast:
2	chr18:45657690..45659673-chr18:45662956..45666549,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184828	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12965052	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4076363	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4076364	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4078130	0.85[ASN][1000 genomes]
rs61322349	0.82[ASN][1000 genomes]
rs7243021	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7243437	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8091725	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8098626	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9951415	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9953845	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45646200-45662000	Weak transcription	Right Atrium	heart
2	chr18:45650000-45659400	Weak transcription	Lung	lung
3	chr18:45650600-45660600	Weak transcription	Fetal Intestine Small	intestine
4	chr18:45651200-45659000	Weak transcription	Colonic Mucosa	Colon
5	chr18:45651400-45659400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr18:45652400-45658600	Weak transcription	Hela-S3	cervix
7	chr18:45653600-45659200	Weak transcription	Gastric	stomach
8	chr18:45654200-45658600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr18:45655600-45659000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr18:45656400-45659600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr18:45656600-45659200	Weak transcription	Fetal Stomach	stomach
12	chr18:45656600-45659400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr18:45656600-45659400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr18:45656600-45659400	Weak transcription	Placenta	Placenta
15	chr18:45656600-45659400	Weak transcription	Ovary	ovary
16	chr18:45656800-45661200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr18:45657000-45658800	Weak transcription	Fetal Kidney	kidney
18	chr18:45657000-45659000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr18:45657000-45659000	Weak transcription	Fetal Muscle Leg	muscle
20	chr18:45657000-45659400	Weak transcription	Esophagus	oesophagus
21	chr18:45658000-45659000	Weak transcription	Stomach Mucosa	stomach
22	chr18:45658000-45659400	Weak transcription	Liver	Liver
23	chr18:45658200-45659000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr18:45658400-45658800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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