Variant report

Variant	rs6511103
Chromosome Location	chr19:20606329-20606330
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28786234	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6511101	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7248879	0.85[AMR][1000 genomes]
rs7255197	0.85[AMR][1000 genomes]
rs73541493	0.86[AFR][1000 genomes]
rs8107658	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3319016	chr19:19917475-20819154	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
2	esv3319017	chr19:19917475-20819154	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
3	esv3390957	chr19:19965887-20819154	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
4	nsv911325	chr19:20151257-21071548	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
5	nsv911332	chr19:20574295-20819154	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
6	nsv911333	chr19:20574295-20819154	ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
7	esv2758489	chr19:20574295-20845947	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
8	esv2758749	chr19:20574295-20845947	ZNF genes & repeats Genic enhancers Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
9	nsv530804	chr19:20574295-21001349	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
10	nsv458390	chr19:20576399-20819154	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
11	nsv458391	chr19:20576399-20819154	ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
12	nsv578819	chr19:20576399-20819154	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:20598400-20606800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:20603800-20606400	Weak transcription	Gastric	stomach
3	chr19:20604000-20608000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:20604800-20608000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr19:20605000-20607800	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr19:20605000-20607800	Active TSS	Ovary	ovary
7	chr19:20605000-20608000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr19:20605000-20608000	Active TSS	Stomach Smooth Muscle	stomach
9	chr19:20605200-20607400	Active TSS	Right Atrium	heart
10	chr19:20605200-20607800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr19:20605200-20607800	Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr19:20605200-20608000	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr19:20605200-20608000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr19:20605200-20608000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr19:20605200-20608000	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr19:20605200-20608000	Active TSS	NHLF	lung
17	chr19:20605200-20608000	Active TSS	Osteobl	bone
18	chr19:20605400-20607600	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr19:20605400-20607600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr19:20605400-20608000	Active TSS	Muscle Satellite Cultured Cells	--
21	chr19:20605400-20608000	Active TSS	Brain Cingulate Gyrus	brain
22	chr19:20605400-20608000	Active TSS	Fetal Brain Female	brain
23	chr19:20605400-20608200	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr19:20605600-20606800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr19:20605600-20607800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr19:20605600-20607800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr19:20605600-20607800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr19:20605600-20607800	Active TSS	H9 Cell Line	embryonic stem cell
29	chr19:20605600-20607800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr19:20605600-20607800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chr19:20605600-20607800	Active TSS	Aorta	Aorta
32	chr19:20605600-20607800	Active TSS	Colon Smooth Muscle	Colon
33	chr19:20605600-20607800	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr19:20605600-20607800	Active TSS	Fetal Stomach	stomach
35	chr19:20605600-20607800	Active TSS	Stomach Mucosa	stomach
36	chr19:20605600-20608000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr19:20605600-20608000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr19:20605600-20608000	Active TSS	Brain Anterior Caudate	brain
39	chr19:20605600-20608000	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr19:20605600-20608000	Active TSS	Duodenum Mucosa	Duodenum
41	chr19:20605600-20608000	Active TSS	NHDF-Ad	bronchial
42	chr19:20605800-20606600	Flanking Active TSS	Dnd41	blood
43	chr19:20605800-20607800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr19:20605800-20607800	Active TSS	Fetal Brain Male	brain
45	chr19:20605800-20607800	Active TSS	Fetal Intestine Large	intestine
46	chr19:20605800-20607800	Active TSS	Fetal Intestine Small	intestine
47	chr19:20605800-20607800	Active TSS	Fetal Muscle Leg	muscle
48	chr19:20605800-20607800	Active TSS	Rectal Mucosa Donor 29	rectum
49	chr19:20605800-20607800	Active TSS	Rectal Smooth Muscle	rectum
50	chr19:20605800-20607800	Active TSS	Right Ventricle	heart

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