Variant report

Variant	rs6514391
Chromosome Location	chr20:13362070-13362071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12329562	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6131478	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6131480	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6131481	0.84[EUR][1000 genomes]
rs6134872	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6134892	0.83[EUR][1000 genomes]
rs6134907	0.85[EUR][1000 genomes]
rs6134908	0.85[EUR][1000 genomes]
rs6134911	0.84[EUR][1000 genomes]
rs73086022	0.85[EUR][1000 genomes]
rs8126063	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425983	chr20:13046768-13461834	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv21228	chr20:13283535-13447810	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1062049	chr20:13347580-13477455	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv544186	chr20:13347580-13477455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6514391	TASP1	cis	lung	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13358800-13365600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:13360200-13368200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:13360600-13363600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr20:13360800-13362400	Enhancers	HepG2	liver
5	chr20:13360800-13363600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:13361800-13362200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:13361800-13362800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr20:13361800-13362800	ZNF genes & repeats	Aorta	Aorta
9	chr20:13361800-13362800	ZNF genes & repeats	Gastric	stomach
10	chr20:13361800-13364400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr20:13361800-13364600	ZNF genes & repeats	Dnd41	blood
12	chr20:13361800-13369400	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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