Variant report

Variant	rs651511
Chromosome Location	chr3:99442950-99442951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1016914	0.82[YRI][hapmap]
rs1021102	0.80[YRI][hapmap]
rs1087198	0.91[YRI][hapmap]
rs1606481	0.92[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs1630555	0.85[ASN][1000 genomes]
rs1711557	0.92[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs1857290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506186	0.87[ASN][1000 genomes]
rs629120	0.92[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs668668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs694429	0.92[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs704570	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs704573	0.91[CEU][hapmap];1.00[CHB][hapmap]
rs7636447	0.82[YRI][hapmap]
rs792828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs792829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs792834	1.00[CHB][hapmap]
rs793445	0.82[YRI][hapmap]
rs793460	0.82[YRI][hapmap]
rs793461	0.82[YRI][hapmap]
rs793462	0.82[YRI][hapmap]
rs793463	0.82[YRI][hapmap]
rs793465	0.82[YRI][hapmap]
rs793466	0.82[YRI][hapmap]
rs793467	0.91[YRI][hapmap]
rs793489	0.80[AFR][1000 genomes]
rs793494	0.91[YRI][hapmap]
rs793495	0.91[YRI][hapmap]
rs796977	0.91[YRI][hapmap]
rs809415	0.82[YRI][hapmap]
rs812657	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv508231	chr3:99442020-99498951	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99433600-99449200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:99440200-99458000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:99440400-99444600	Weak transcription	NHLF	lung
4	chr3:99440400-99448600	Weak transcription	HSMM	muscle
5	chr3:99440400-99450200	Weak transcription	HSMMtube	muscle
6	chr3:99440400-99458000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:99440400-99458200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:99440400-99471000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:99440600-99449200	Weak transcription	NHDF-Ad	bronchial
10	chr3:99440800-99449400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:99441200-99448600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:99441200-99458000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:99441400-99466800	Weak transcription	NH-A	brain
14	chr3:99442200-99448800	Weak transcription	HUVEC	blood vessel
15	chr3:99442600-99443200	Genic enhancers	Muscle Satellite Cultured Cells	--
16	chr3:99442600-99444200	Strong transcription	Osteobl	bone
17	chr3:99442800-99443000	Enhancers	Adipose Nuclei	Adipose
18	chr3:99442800-99443000	Enhancers	Fetal Lung	lung
19	chr3:99442800-99443400	Genic enhancers	Aorta	Aorta

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