Variant report

Variant	rs6517676
Chromosome Location	chr21:17267864-17267865
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17265205..17268363-chr21:17275143..17278889,4	K562	blood:
2	chr21:17266617..17268708-chr21:17272373..17274674,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16990799	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2823515	0.86[AMR][1000 genomes]
rs9979237	0.82[MEX][hapmap]
rs9981282	0.82[MEX][hapmap]
rs9982588	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9983171	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17245400-17270400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr21:17253000-17268200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr21:17253200-17268000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr21:17253200-17268000	Weak transcription	Left Ventricle	heart
5	chr21:17253200-17269000	Weak transcription	Psoas Muscle	Psoas
6	chr21:17253400-17269400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr21:17255400-17269600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr21:17255800-17268000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr21:17255800-17268000	Weak transcription	Ovary	ovary
10	chr21:17256600-17270400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr21:17256800-17268400	Weak transcription	A549	lung
12	chr21:17261400-17271800	Weak transcription	HSMM	muscle
13	chr21:17266600-17269600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr21:17267200-17268000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr21:17267200-17268000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr21:17267200-17268200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr21:17267200-17268200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr21:17267200-17268400	Enhancers	Colon Smooth Muscle	Colon
19	chr21:17267200-17268400	Enhancers	Fetal Lung	lung
20	chr21:17267400-17268000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr21:17267400-17268000	Enhancers	Fetal Kidney	kidney
22	chr21:17267400-17268200	Enhancers	Osteobl	bone
23	chr21:17267600-17268000	Enhancers	Brain Angular Gyrus	brain
24	chr21:17267600-17268200	Enhancers	Rectal Smooth Muscle	rectum
25	chr21:17267600-17268200	Enhancers	HSMMtube	muscle
26	chr21:17267600-17269000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr21:17267800-17268400	Enhancers	Adipose Nuclei	Adipose

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