Variant report

Variant	rs6518791
Chromosome Location	chr22:33147787-33147788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33144568..33146477-chr22:33146866..33149245,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16991497	1.00[MEX][hapmap]
rs57302045	1.00[EUR][1000 genomes]
rs58893951	1.00[EUR][1000 genomes]
rs58952697	1.00[EUR][1000 genomes]
rs5998666	1.00[EUR][1000 genomes]
rs5998667	1.00[EUR][1000 genomes]
rs7284750	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7284962	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73408532	1.00[EUR][1000 genomes]
rs73881911	1.00[EUR][1000 genomes]
rs73881913	1.00[EUR][1000 genomes]
rs73881916	1.00[EUR][1000 genomes]
rs8139676	1.00[EUR][1000 genomes]
rs8139856	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33141400-33148400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr22:33141600-33150600	Weak transcription	Spleen	Spleen
3	chr22:33142600-33150600	Weak transcription	HMEC	breast
4	chr22:33143000-33148600	Weak transcription	Right Ventricle	heart
5	chr22:33143000-33149800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr22:33143000-33150400	Weak transcription	Lung	lung
7	chr22:33143000-33150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr22:33143200-33148600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr22:33143200-33148600	Weak transcription	Fetal Muscle Leg	muscle
10	chr22:33143200-33150600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr22:33144000-33148000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr22:33144000-33148200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr22:33144000-33148400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr22:33144000-33148600	Weak transcription	Adipose Nuclei	Adipose
15	chr22:33144000-33149200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr22:33144000-33149200	Weak transcription	Right Atrium	heart
17	chr22:33144000-33150400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr22:33144000-33150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr22:33144200-33148400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr22:33144800-33148200	Weak transcription	Fetal Stomach	stomach
21	chr22:33144800-33150400	Weak transcription	Left Ventricle	heart
22	chr22:33145800-33150400	Enhancers	HepG2	liver
23	chr22:33146400-33148000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr22:33146600-33147800	Enhancers	Hela-S3	cervix
25	chr22:33146600-33148600	Weak transcription	Fetal Thymus	thymus
26	chr22:33147200-33147800	Enhancers	Liver	Liver
27	chr22:33147600-33148600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links