Variant report

Variant	rs6526917
Chromosome Location	chrX:29709546-29709547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11095157	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs4128143	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs4128144	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs4829265	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs5927155	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs5928161	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs5928246	0.82[CHB][hapmap]
rs5972489	0.93[CEU][hapmap]
rs5972490	0.93[CEU][hapmap]
rs5972675	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs6526910	0.86[CEU][hapmap]
rs6628465	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs6628466	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs6628467	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs6628472	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs6630941	0.93[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs6630946	0.81[CEU][hapmap]
rs6630950	0.81[CHB][hapmap]
rs7057181	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432292	chrX:29109744-29845461	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv531766	chrX:29225499-29928832	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv948944	chrX:29398264-29902917	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv869450	chrX:29433295-29940875	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv869408	chrX:29619835-30341063	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv534236	chrX:29637266-29908300	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv949460	chrX:29680441-29902917	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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