Variant report

Variant	rs652932
Chromosome Location	chr3:34824531-34824532
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1522967	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4449263	0.90[ASN][1000 genomes]
rs510111	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs522543	0.88[ASN][1000 genomes]
rs548933	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs549416	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs558254	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs591834	0.80[AFR][1000 genomes]
rs600767	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs603928	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs608250	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs615403	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs651154	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs667066	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs673938	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs674770	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs683010	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34823800-34824600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:34823800-34826200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:34823800-34826800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:34824000-34824600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:34824200-34826200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:34824400-34824600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:34824400-34824600	Enhancers	Aorta	Aorta
8	chr3:34824400-34824800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:34824400-34826000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:34824400-34826200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr3:34824400-34826600	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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