Variant report

Variant	rs6531784
Chromosome Location	chr4:76557308-76557309
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76438650..76441575-chr4:76556052..76558649,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163743	Chromatin interaction
ENSG00000174796	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11097070	0.80[AMR][1000 genomes]
rs13118426	0.80[AMR][1000 genomes]
rs13137468	0.80[AMR][1000 genomes]
rs13138717	0.80[AMR][1000 genomes]
rs1553986	0.80[AMR][1000 genomes]
rs1967495	0.80[AMR][1000 genomes]
rs1967496	0.80[AMR][1000 genomes]
rs3796485	0.80[AMR][1000 genomes]
rs4349625	0.80[AMR][1000 genomes]
rs4859403	0.80[AMR][1000 genomes]
rs4859545	0.80[AMR][1000 genomes]
rs4859546	0.80[AMR][1000 genomes]
rs4859547	0.80[AMR][1000 genomes]
rs4859548	0.80[AMR][1000 genomes]
rs6531866	0.80[AMR][1000 genomes]
rs6531868	0.80[AMR][1000 genomes]
rs6826858	0.80[AMR][1000 genomes]
rs7659408	0.80[AMR][1000 genomes]
rs7672378	0.80[AMR][1000 genomes]
rs7691765	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879495	chr4:76493256-76585823	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv879496	chr4:76493256-76620803	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv879497	chr4:76519096-76620803	Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv1793652	chr4:76521217-76581775	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76556200-76559200	Weak transcription	HSMM	muscle
2	chr4:76556200-76567600	Weak transcription	Liver	Liver
3	chr4:76556200-76590000	Weak transcription	Small Intestine	intestine
4	chr4:76556400-76558200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:76556400-76558600	Weak transcription	HMEC	breast
6	chr4:76556400-76559600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:76556400-76562200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:76556400-76562400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:76556400-76562600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:76556400-76562800	Weak transcription	Aorta	Aorta
11	chr4:76556400-76565000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:76556400-76565200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr4:76556400-76565200	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:76556400-76565600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:76556400-76565600	Weak transcription	Fetal Stomach	stomach
16	chr4:76556400-76567000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:76556400-76567400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:76556400-76567400	Weak transcription	Placenta	Placenta
19	chr4:76556400-76567400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:76556400-76567800	Weak transcription	NHDF-Ad	bronchial
21	chr4:76556400-76568000	Weak transcription	Primary B cells from cord blood	blood
22	chr4:76556400-76568000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:76556400-76568000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:76556400-76568200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr4:76556400-76568600	Weak transcription	Adipose Nuclei	Adipose
26	chr4:76556400-76568600	Weak transcription	GM12878-XiMat	blood
27	chr4:76556400-76568600	Weak transcription	HUVEC	blood vessel
28	chr4:76556400-76568600	Weak transcription	Osteobl	bone
29	chr4:76556400-76568800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr4:76556400-76568800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:76556400-76568800	Weak transcription	Thymus	Thymus
32	chr4:76556400-76568800	Weak transcription	NH-A	brain
33	chr4:76556400-76569000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr4:76556400-76569000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:76556400-76569000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr4:76556400-76569000	Weak transcription	Stomach Mucosa	stomach
37	chr4:76556400-76569800	Weak transcription	Psoas Muscle	Psoas
38	chr4:76556400-76570000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr4:76556400-76570000	Weak transcription	Fetal Brain Male	brain
40	chr4:76556400-76570200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr4:76556400-76570600	Weak transcription	Esophagus	oesophagus
42	chr4:76556400-76570600	Weak transcription	Lung	lung
43	chr4:76556400-76570600	Weak transcription	Ovary	ovary
44	chr4:76556400-76570600	Weak transcription	Spleen	Spleen
45	chr4:76556600-76557600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr4:76556600-76559600	Weak transcription	NHEK	skin
47	chr4:76556600-76560800	Weak transcription	Fetal Kidney	kidney
48	chr4:76556600-76562600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:76556600-76562800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr4:76556600-76565200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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