Variant report

Variant	rs6532198
Chromosome Location	chr4:90798870-90798871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10001067	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10004413	0.88[EUR][1000 genomes]
rs10028246	0.83[EUR][1000 genomes]
rs12331318	0.88[EUR][1000 genomes]
rs1348224	0.85[EUR][1000 genomes]
rs1372507	0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs1372521	0.84[EUR][1000 genomes]
rs1372522	0.84[EUR][1000 genomes]
rs1442134	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1442135	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1442140	0.88[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1822217	0.82[EUR][1000 genomes]
rs1899389	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2011543	0.81[ASN][1000 genomes]
rs2301134	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2301135	0.83[EUR][1000 genomes]
rs2736994	0.97[ASN][1000 genomes]
rs28403500	0.88[EUR][1000 genomes]
rs28415623	0.83[EUR][1000 genomes]
rs28507349	0.83[EUR][1000 genomes]
rs28734152	0.88[EUR][1000 genomes]
rs28777703	0.88[EUR][1000 genomes]
rs35424815	0.88[EUR][1000 genomes]
rs3756059	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs3756063	0.82[EUR][1000 genomes]
rs3806789	0.84[EUR][1000 genomes]
rs58864428	0.83[EUR][1000 genomes]
rs6532192	0.85[EUR][1000 genomes]
rs6532193	0.85[EUR][1000 genomes]
rs6812192	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6816736	0.84[EUR][1000 genomes]
rs6817001	0.84[EUR][1000 genomes]
rs6831847	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6839608	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6843084	0.84[EUR][1000 genomes]
rs6848181	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs763443	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7656954	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7671549	0.88[EUR][1000 genomes]
rs7672979	0.88[EUR][1000 genomes]
rs7680557	0.85[EUR][1000 genomes]
rs7680761	0.85[EUR][1000 genomes]
rs7681154	0.84[EUR][1000 genomes]
rs7687945	0.85[EUR][1000 genomes]
rs7691487	0.87[ASN][1000 genomes]
rs7698219	0.88[EUR][1000 genomes]
rs894280	0.85[EUR][1000 genomes]
rs9307077	0.92[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv997700	chr4:90791866-90920021	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6532198	MMRN1	cis	multi-tissue	Pritchard

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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