Variant report

Variant	rs6532624
Chromosome Location	chr4:97445683-97445684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10012312	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10012487	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10018197	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10022608	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11097514	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11935830	0.81[EUR][1000 genomes]
rs12639647	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12645609	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12645669	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12646509	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1400341	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1516670	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1516672	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1588981	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2090376	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2090377	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2203629	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2203631	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28409524	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4299674	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4699512	0.82[EUR][1000 genomes]
rs4699513	0.82[EUR][1000 genomes]
rs4699524	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57499976	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59070882	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6532615	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6532622	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6532623	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6532626	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6826069	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6827340	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6829988	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6838629	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6852663	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6855505	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6856143	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7654868	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7664207	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7667137	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7670117	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7671980	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7684850	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7688060	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9993653	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1007650	chr4:97393803-97485770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97442400-97446400	Weak transcription	Dnd41	blood
2	chr4:97442800-97446000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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